Prepare for 3.6.3 release

MStarmans91 · Aug 15, 2023 · 3d8aaa6 · 3d8aaa6
1 parent 3717d52
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Showing 3 changed files with 8 additions and 3 deletions.
diff --git a/WORC/doc/_build/doctrees/environment.pickle b/WORC/doc/_build/doctrees/environment.pickle
diff --git a/WORC/doc/_build/html/_modules/WORC/featureprocessing/StatisticalTestFeatures.html b/WORC/doc/_build/html/_modules/WORC/featureprocessing/StatisticalTestFeatures.html
@@ -205,7 +205,7 @@ <h1>Source code for WORC.featureprocessing.StatisticalTestFeatures</h1><div clas
                             <span class="n">Bonferonni</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
                             <span class="n">fontsize</span><span class="o">=</span><span class="s1">&#39;small&#39;</span><span class="p">,</span> <span class="n">yspacing</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
                             <span class="n">threshold</span><span class="o">=</span><span class="mf">0.05</span><span class="p">,</span> <span class="n">verbose</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">label_type</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
-    <span class="sd">&quot;&quot;&quot;Perform several statistical tests on features, such as a student t-test.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Perform several statistical tests on features, such as a student t-test.</span>
 
 <span class="sd">    Parameters</span>
 <span class="sd">    ----------</span>
@@ -251,7 +251,6 @@ <h1>Source code for WORC.featureprocessing.StatisticalTestFeatures</h1><div clas
     <span class="k">if</span> <span class="nb">type</span><span class="p">(</span><span class="n">output_tex</span><span class="p">)</span> <span class="ow">is</span> <span class="nb">list</span><span class="p">:</span>
         <span class="n">output_tex</span> <span class="o">=</span> <span class="s1">&#39;&#39;</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">output_tex</span><span class="p">)</span>
 
-    <span class="nb">print</span><span class="p">(</span><span class="n">output_png</span><span class="p">,</span> <span class="n">output_tex</span><span class="p">)</span>
     <span class="c1"># Create output folder if required</span>
     <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">output_csv</span><span class="p">)):</span>
         <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">output_csv</span><span class="p">))</span>
@@ -324,7 +323,12 @@ <h1>Source code for WORC.featureprocessing.StatisticalTestFeatures</h1><div clas
             <span class="n">pvalueswelch</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ttest_ind</span><span class="p">(</span><span class="n">class1</span><span class="p">,</span> <span class="n">class2</span><span class="p">,</span> <span class="n">equal_var</span><span class="o">=</span><span class="kc">False</span><span class="p">)[</span><span class="mi">1</span><span class="p">])</span>
             <span class="n">pvalueswil</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">ranksums</span><span class="p">(</span><span class="n">class1</span><span class="p">,</span> <span class="n">class2</span><span class="p">)[</span><span class="mi">1</span><span class="p">])</span>
             <span class="k">try</span><span class="p">:</span>
-                <span class="n">pvaluesmw</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">mannwhitneyu</span><span class="p">(</span><span class="n">class1</span><span class="p">,</span> <span class="n">class2</span><span class="p">)[</span><span class="mi">1</span><span class="p">])</span>
+                <span class="n">pmwu</span> <span class="o">=</span> <span class="n">mannwhitneyu</span><span class="p">(</span><span class="n">class1</span><span class="p">,</span> <span class="n">class2</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
+                <span class="k">if</span> <span class="n">pmwu</span> <span class="o">==</span> <span class="mf">0.0</span><span class="p">:</span>
+                    <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;[WORC Warning] Mann-Whitney U test resulted in a p-value of exactly 0.0, which is not valid. Replacing metric value by NaN.&quot;</span><span class="p">)</span>
+                    <span class="n">pvaluesmw</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">)</span>
+                <span class="k">else</span><span class="p">:</span>
+                    <span class="n">pvaluesmw</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">pmwu</span><span class="p">)</span>
             <span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
                 <span class="nb">print</span><span class="p">(</span><span class="s2">&quot;[WORC Warning] &quot;</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">)</span> <span class="o">+</span> <span class="s1">&#39;. Replacing metric value by NaN.&#39;</span><span class="p">)</span>
                 <span class="n">pvaluesmw</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">np</span><span class="o">.</span><span class="n">nan</span><span class="p">)</span>

diff --git a/WORC/doc/_build/html/_static/pygments.css b/WORC/doc/_build/html/_static/pygments.css
@@ -17,6 +17,7 @@ span.linenos.special { color: #000000; background-color: #ffffc0; padding-left:
 .highlight .cs { color: #408090; background-color: #fff0f0 } /* Comment.Special */
 .highlight .gd { color: #A00000 } /* Generic.Deleted */
 .highlight .ge { font-style: italic } /* Generic.Emph */
+.highlight .ges { font-weight: bold; font-style: italic } /* Generic.EmphStrong */
 .highlight .gr { color: #FF0000 } /* Generic.Error */
 .highlight .gh { color: #000080; font-weight: bold } /* Generic.Heading */
 .highlight .gi { color: #00A000 } /* Generic.Inserted */