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Fix issues in Readme
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MStarmans91 committed Aug 14, 2023
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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -140,9 +140,9 @@ Make sure you add the executable to the PATH when prompted.
### Elastix
Image registration is included in WORC through [elastix and transformix](http://elastix.isi.uu.nl/).
In order to use elastix, please download the binaries and place them in your
fastr.config.mounts['apps'] path. Check the elastix tool description for the correct
subdirectory structure. For example, on Linux, the binaries and libraries should be in "../apps/elastix/4.8/install/" and
"../apps/elastix/4.8/install/lib" respectively.
``fastr.config.mounts['apps']`` path. Check the elastix tool description for the correct
subdirectory structure. For example, on Linux, the binaries and libraries should be in ``"../apps/elastix/4.8/install/"`` and
``"../apps/elastix/4.8/install/lib"`` respectively.

Note: optionally, you can tell WORC to copy the metadata from the image file
to the segmentation file before applying the deformation field. This requires
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8 changes: 4 additions & 4 deletions README.rst
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Expand Up @@ -185,10 +185,10 @@ Elastix
Image registration is included in WORC through `elastix and
transformix <http://elastix.isi.uu.nl/>`__. In order to use elastix,
please download the binaries and place them in your
fastr.config.mounts[apps’] path. Check the elastix tool description for
the correct subdirectory structure. For example, on Linux, the binaries
and libraries should be in ../apps/elastix/4.8/install/” and
../apps/elastix/4.8/install/lib respectively.
``fastr.config.mounts['apps']`` path. Check the elastix tool description
for the correct subdirectory structure. For example, on Linux, the
binaries and libraries should be in ``"../apps/elastix/4.8/install/"``
and ``"../apps/elastix/4.8/install/lib"`` respectively.

Note: optionally, you can tell WORC to copy the metadata from the image
file to the segmentation file before applying the deformation field.
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