Skip to content

No clip example

No clip example #16

Triggered via pull request November 29, 2024 12:34
Status Failure
Total duration 7m 6s
Artifacts

CI.yml

on: pull_request
Matrix: test
Fit to window
Zoom out
Zoom in

Annotations

4 errors
Documentation: ../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example.md:63-80 ```@example 3 using FileIO using qMRIColors x = FileIO.load("sampleT1map.jld")["sampleT1map"] loLev = 700 upLev = 1500 cmap,imClip = relaxationColorMap("T1",x,loLev,upLev) using Plots #GR backend gr(size=(400,300)) p = Plots.heatmap(imClip, c=cmap, clim=(loLev,upLev), yflip=true ) ``` exception = ArgumentError: No file exists at given path: sampleT1map.jld Stacktrace: [1] checkpath_load(file::String) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:167 [2] load(::String; options::@kwargs{}) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:110 [3] load(::String) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:109 [4] top-level scope @ example.md:67 [5] eval @ ./boot.jl:430 [inlined] [6] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [10] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [11] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
Documentation: ../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example.md:85-102 ```@example 4 using FileIO using qMRIColors x = FileIO.load("sampleT1map.jld")["sampleT1map"] loLev = 700 upLev = 1500 cmap,imClip = relaxationColorMap("T1",x,loLev,upLev) using PythonPlot cmap_py = PythonPlot.ColorMap("relaxationColor", cmap, length(cmap), 1.0) # translating the colormap to a format digestible by PythonPlot figure() imshow(imClip, vmin=loLev, vmax =upLev, interpolation="bicubic", cmap=cmap_py) colorbar() PythonPlot.savefig("plot.png") ``` exception = ArgumentError: No file exists at given path: sampleT1map.jld Stacktrace: [1] checkpath_load(file::String) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:167 [2] load(::String; options::@kwargs{}) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:110 [3] load(::String) @ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:109 [4] top-level scope @ example.md:89 [5] eval @ ./boot.jl:430 [inlined] [6] #60 @ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined] [7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802 [9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [10] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState) @ Base.CoreLogging ./logging/logging.jl:522 [11] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger) @ Base.CoreLogging ./logging/logging.jl:632 [12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
Documentation: ../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
invalid local link/image: file does not exist in src/example.md link = @ast MarkdownAST.Image("plot.png", "") do MarkdownAST.Text("") end
Documentation
Process completed with exit code 1.