No clip example #16
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4 errors
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example.md:63-80
```@example 3
using FileIO
using qMRIColors
x = FileIO.load("sampleT1map.jld")["sampleT1map"]
loLev = 700
upLev = 1500
cmap,imClip = relaxationColorMap("T1",x,loLev,upLev)
using Plots #GR backend
gr(size=(400,300))
p = Plots.heatmap(imClip,
c=cmap,
clim=(loLev,upLev),
yflip=true
)
```
exception =
ArgumentError: No file exists at given path: sampleT1map.jld
Stacktrace:
[1] checkpath_load(file::String)
@ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:167
[2] load(::String; options::@kwargs{})
@ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:110
[3] load(::String)
@ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:109
[4] top-level scope
@ example.md:67
[5] eval
@ ./boot.jl:430 [inlined]
[6] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[10] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[11] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example.md:85-102
```@example 4
using FileIO
using qMRIColors
x = FileIO.load("sampleT1map.jld")["sampleT1map"]
loLev = 700
upLev = 1500
cmap,imClip = relaxationColorMap("T1",x,loLev,upLev)
using PythonPlot
cmap_py = PythonPlot.ColorMap("relaxationColor", cmap, length(cmap), 1.0) # translating the colormap to a format digestible by PythonPlot
figure()
imshow(imClip, vmin=loLev, vmax =upLev, interpolation="bicubic", cmap=cmap_py)
colorbar()
PythonPlot.savefig("plot.png")
```
exception =
ArgumentError: No file exists at given path: sampleT1map.jld
Stacktrace:
[1] checkpath_load(file::String)
@ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:167
[2] load(::String; options::@kwargs{})
@ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:110
[3] load(::String)
@ FileIO ~/.julia/packages/FileIO/PtqMQ/src/loadsave.jl:109
[4] top-level scope
@ example.md:89
[5] eval
@ ./boot.jl:430 [inlined]
[6] #60
@ ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:803 [inlined]
[7] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[8] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:802
[9] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[10] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[11] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[12] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[13] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/Bs999/src/expander_pipeline.jl:801
|
Documentation:
../../../.julia/packages/Documenter/Bs999/src/utilities/utilities.jl#L44
invalid local link/image: file does not exist in src/example.md
link =
@ast MarkdownAST.Image("plot.png", "") do
MarkdownAST.Text("")
end
|
Documentation
Process completed with exit code 1.
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