change again

.github/workflows/CI.yml

@@ -73,6 +73,6 @@ jobs:
         shell: julia --project=docs --color=yes {0}
         run: |
           using Documenter: DocMeta, doctest
-          using QuantitativeMRIColors
-          DocMeta.setdocmeta!(QuantitativeMRIColors, :DocTestSetup, :(using QuantitativeMRIColors); recursive=true)
-          doctest(QuantitativeMRIColors)
+          using QMRIColors
+          DocMeta.setdocmeta!(QMRIColors, :DocTestSetup, :(using QMRIColors); recursive=true)
+          doctest(QMRIColors)

Project.toml

@@ -1,4 +1,4 @@
-name = "QuantitativeMRIColors"
+name = "QMRIColors"
 uuid = "2bec176e-9e8c-4764-a62f-295118d1ec05"
 authors = ["aTrotier <[email protected]> and contributors"]
 version = "1.0.0"

README.md

@@ -1,9 +1,9 @@
-# QuantitativeMRIColors
+# QMRIColors
 
-[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://magneticresonanceimaging.github.io/QuantitativeMRIColors.jl/stable/)
-[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://magneticresonanceimaging.github.io/QuantitativeMRIColors.jl/dev/)
-[![Build Status](https://github.com/magneticresonanceimaging/QuantitativeMRIColors.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/magneticresonanceimaging/QuantitativeMRIColors.jl/actions/workflows/CI.yml?query=branch%3Amain)
-[![Coverage](https://codecov.io/gh/magneticresonanceimaging/QuantitativeMRIColors.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/magneticresonanceimaging/QuantitativeMRIColors.jl)
+[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://magneticresonanceimaging.github.io/QMRIColors.jl/stable/)
+[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://magneticresonanceimaging.github.io/QMRIColors.jl/dev/)
+[![Build Status](https://github.com/magneticresonanceimaging/QMRIColors.jl/actions/workflows/CI.yml/badge.svg?branch=main)](https://github.com/magneticresonanceimaging/QMRIColors.jl/actions/workflows/CI.yml?query=branch%3Amain)
+[![Coverage](https://codecov.io/gh/magneticresonanceimaging/QMRIColors.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/magneticresonanceimaging/QMRIColors.jl)
 
 
 Julia package of https://github.com/mfuderer/colorResources
@@ -20,19 +20,19 @@ Julia package of https://github.com/mfuderer/colorResources
 ```@example 1
 # x is the image to be displayed, (loLev,upLev) is the relevant range of the values 
 # we take T1 as an example
-using QuantitativeMRIColors
+using QMRIColors
 cmap,imClip = relaxationColorMap("T1",x,loLev,upLev)
 VIEW(imClip,c=cmap,clim=(loLev,upLev)) 
 ```
 > [!IMPORTANT]
-> <p>In the above, "VIEW" refers to your favorite viewing software (CairoMakie, Plots, PyPlot, ...) : [see example](https://magneticresonanceimaging.github.io/QuantitativeMRIColors.jl/dev/example/)</p>
+> <p>In the above, "VIEW" refers to your favorite viewing software (CairoMakie, Plots, PyPlot, ...) : [see example](https://magneticresonanceimaging.github.io/QMRIColors.jl/dev/example/)</p>
 
 <p>The relaxationColorMap() function selects the appropriate color-map (in this case, Lipari for T1) and applies logarithm-processing on that color map. The resulting colormap is returned.</p>
 <p>The "imclip" image should retain the distinction between the "invalid" value of 0 (which is to be displayed as black) and "valid" values that are below loLev (these should be shown in a dark shade of blue). Depending on the calibration of your screen, you may or may not see that distinction.</p>
 <p><br>A simplified processing can be done by</p>
 
 ```@example 2
-using QuantitativeMRIColors
+using QMRIColors
 cmap = relaxationColorMap("T1")
 VIEW(x,c=cmap) # Do not use range limits here! 
 ```

docs/Project.toml

@@ -6,4 +6,4 @@ FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
 JLD = "4138dd39-2aa7-5051-a626-17a0bb65d9c8"
 Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 PythonPlot = "274fc56d-3b97-40fa-a1cd-1b4a50311bf9"
-QuantitativeMRIColors = "2bec176e-9e8c-4764-a62f-295118d1ec05"
+QMRIColors = "2bec176e-9e8c-4764-a62f-295118d1ec05"

docs/make.jl

@@ -1,14 +1,14 @@
-using QuantitativeMRIColors
+using QMRIColors
 using Documenter
 
-DocMeta.setdocmeta!(QuantitativeMRIColors, :DocTestSetup, :(using QuantitativeMRIColors); recursive=true)
+DocMeta.setdocmeta!(QMRIColors, :DocTestSetup, :(using QMRIColors); recursive=true)
 
 makedocs(;
-    modules=[QuantitativeMRIColors],
+    modules=[QMRIColors],
     authors="aTrotier <[email protected]> and contributors",
-    sitename="QuantitativeMRIColors.jl",
+    sitename="QMRIColors.jl",
     format=Documenter.HTML(;
-        canonical="https://magneticresonanceimaging.github.io/QuantitativeMRIColors.jl",
+        canonical="https://magneticresonanceimaging.github.io/QMRIColors.jl",
         edit_link="main",
         assets=String[],
     ),
@@ -22,6 +22,6 @@ makedocs(;
 )
 
 deploydocs(;
-    repo="github.com/MagneticResonanceImaging/QuantitativeMRIColors.jl",
+    repo="github.com/MagneticResonanceImaging/QMRIColors.jl",
     devbranch="main",
 )

docs/src/api.md

@@ -2,5 +2,5 @@
 ```
 
 ```@autodocs
-Modules = [QuantitativeMRIColors]
+Modules = [QMRIColors]
 ```

docs/src/clip.md

@@ -6,7 +6,7 @@ The "imclip" image should retain the distinction between the "invalid" value of
 A simplified processing can be done by
 
 ```julia
-using QuantitativeMRIColors
+using QMRIColors
 cmap = relaxationColorMap("T1")
 VIEW(x,c=cmap) # Do not use range limits here! 
 ```
@@ -23,7 +23,7 @@ Let's build an example to see the effect.
 ## Create a Synthetic phantom
 
 ```@example clip
-using QuantitativeMRIColors
+using QMRIColors
 using CairoMakie
 
 # -----  Make test object: gradually increasing T1, but invalid outside a circle

docs/src/colormaps.md

@@ -1,7 +1,7 @@
 # qMRI colormaps
 
 ```@example 1
-using QuantitativeMRIColors
+using QMRIColors
 using CairoMakie
 ```
 

docs/src/example.md

@@ -9,7 +9,7 @@ Download sample used in the following example
 ```@example 3
 using FileIO
 using Downloads
-using QuantitativeMRIColors
+using QMRIColors
 using CairoMakie
 
 url = "https://github.com/mfuderer/colorResources/raw/refs/heads/main/sampleT1map.jld"
@@ -25,7 +25,7 @@ nothing # hide
 For `Makie.jl` the colormap can be directly used like `heatmap(x,colormap=cmap,colorrange=(loLev,upLev))`
 
 ```@example 3
-using QuantitativeMRIColors
+using QMRIColors
 using CairoMakie
 
 # -----  Make test object: gradually increasing T1, but invalid outside a circle
@@ -69,7 +69,7 @@ end
 Using GR backend
 
 ```@example 3
-using QuantitativeMRIColors
+using QMRIColors
 using Plots #GR backend
 
 loLev = 700
@@ -90,7 +90,7 @@ The colormap needs to be converted to a usable format with the following command
 
 ```@example 4
 using FileIO
-using QuantitativeMRIColors
+using QMRIColors
 
 x = FileIO.load("sampleT1map.jld")["sampleT1map"]
 

docs/src/index.md

@@ -1,8 +1,8 @@
 ```@meta
-CurrentModule = QuantitativeMRIColors
+CurrentModule = QMRIColors
 ```
 
-Documentation for [QuantitativeMRIColors](https://github.com/magneticresonanceimaging/QuantitativeMRIColors.jl).
+Documentation for [QMRIColors](https://github.com/magneticresonanceimaging/QMRIColors.jl).
 
 # Introduction
 

test/runtests.jl

@@ -1,8 +1,8 @@
-using QuantitativeMRIColors
+using QMRIColors
 using Colors
 using Test
 
-@testset "QuantitativeMRIColors.jl" begin
+@testset "QMRIColors.jl" begin
 
     @testset "colormap" begin
     # T1 test