v0.3.0

Bug Fixes

• Fix bug in interppolation.py in variables initialization.
• Fix bug in ibsi2p1.ipynb in final result plotting.

Improvements & New Features

• Added the learning module
• Added textural filtering
• Added a usage example to README.
• Updated README on Authors and Acknowledgement sections.
• Renaming MEDimage to MEDscan and updating all the parts of the package (code, documentation and notebooks).
• Renamed MEDscan attributes for more simplicity.
• Removed warnings in DataManager when working on the fly.

Documentation

• Configurations files and extra details for machine learning
• Added figure to explain ROI names in CSV File section.
• Fixed all typos detected by Lab members.
• Added new page to explain input data types used in the package.
• Added documentation for ProcessDICOM class and deleted it for removed files (#33).
• Updated README on documentation section (#32).

Notebooks

• New tutorials for learning module
• Typos check
• All notebooks have been updated to use the new class name MEDscan.

What's Changed

• Last merge to main (learning module, textural filters, new tutorials, etc) in #56
• Added learning module in #49
• Added pypi badge with version by @MahdiAll99 in #43
• Correction du README. by @AndreanneAllaire in #44
• Modified morph.py to use new pandas version. by @AndreanneAllaire in #45
• Learning --> Dev by @MahdiAll99 in #49
• Final merge before publication by @MahdiAll99 in #50
• Updated license by @MahdiAll99 in #51
• Updated python version everywhere by @MahdiAll99 in #52
• Added pycaret to dependencies by @MahdiAll99 in #53
• deleted auto ml by @MahdiAll99 in #54
• Updated to fit new code by @MahdiAll99 in #55
• Updated to fit new code by @MahdiAll99 in #56

New Contributors

• @AndreanneAllaire made their first contribution in #44

Full Changelog: v0.2.0...v0.3.0

v0.2.0

Bug Fixes

• Fix bug in ProcessDICOM for Sagittal and Coronal scans processing (#31).
• Fix bug in DataManager in keep_instances option (#31).
• Fix bug in documentation: process_files() documentation not showed because of ray decorator (#33).

Improvements & New Features

• filters sub-package full refactoring (architecture, code, methods...) (#30).
• Percentiles choice in DataManager radiomics pre-checks (#31).
• Added a new class ProcessDICOM that will be called to process dicom files for a single scan (replaces process_dicom_scan_files and combine_slices) (#31).
• ProcessDICOM orientation determination process (#32).
• Data downloading process. The user can choose to only download a subset of the dataset (#31).

Documentation

• Added additional instructions for data downloading (#32).
• Added documentation for ProcessDICOM class and deleted it for removed files (#33).
• Updated README on documentation section (#32).

Notebooks (#30, #31, #32)

• All notebooks have been updated to use the new code (ProcessDICOM, filters sub-package...).

v0.1.0

• Initial development release of MEDimage, a Python open-source package for medical images processing and radiomic features extraction.
• Documentation published at readthedocs