Release/1.1.8

.Rbuildignore

@@ -1,12 +1,11 @@
-^renv$
-^renv\.lock$
 ^.*\.Rproj$
 ^\.Rproj\.user$
-^\.travis\.yml$
-^README\.Rmd$
-^README\.md$
-^NEWS\.md$
-^README-.*\.png$
-^_pkgdown.yml
-^docs/
-^docker/
+^renv$
+^renv\.lock$
+README.Rmd
+Makefile
+LICENSE
+^\.github$
+_pkgdown.yml
+docs/
+docker/

.github/.gitignore

@@ -0,0 +1 @@
+*.html

.github/workflows/Features.yaml

@@ -0,0 +1,73 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [feat/**]
+    paths: [DESCRIPTION, .Rbuildignore, R/**, tests/**, inst/**, .github/**]
+
+
+name: Feature-branch-checks
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: true
+      matrix:
+        config:
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: rcmdcheck, covr, tinytest, lintr, pkgdown
+
+      # - name: Lint
+      #   run: |
+      #     library(tinytest)
+      #     out <- lintr::lint_dir()
+      #     if (0 < length(out)) stop("Linting failure") else print("Linting successful")
+      #   shell: Rscript {0}
+
+      - name: Coverage
+        run: |
+          library(tinytest)
+          roxygen2::roxygenize()
+          test_covr <- covr::percent_coverage(covr::package_coverage())
+          if (test_covr < 90) stop(sprintf("Coverage of %s (<90) too low", lowest_covr_value))
+        shell: Rscript {0}
+
+      - name: Check
+        env:
+          _R_CHECK_CRAN_INCOMING_: false
+        run: |
+          options(crayon.enabled = TRUE)
+          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
+        shell: Rscript {0}
+
+      - name: Check if pkgdown site can be build
+        run: make pkgdown
+        shell: bash
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@main
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,60 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [master, development]
+    paths: [DESCRIPTION, .Rbuildignore, R/**, tests/**, inst/**, .github/**]
+  pull_request:
+    branches: [master, development]
+    paths: [DESCRIPTION, .Rbuildignore, R/**, tests/**, inst/**, .github/**]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: rcmdcheck
+
+      - name: Check
+        env:
+          _R_CHECK_CRAN_INCOMING_: false
+        run: |
+          options(crayon.enabled = TRUE)
+          roxygen2::roxygenize()
+          rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
+        shell: Rscript {0}
+
+      - name: Upload check results
+        if: failure()
+        uses: actions/upload-artifact@main
+        with:
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
+          path: check

.github/workflows/Test-coverage.yaml

@@ -0,0 +1,46 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [master, development]
+    paths: [DESCRIPTION, .Rbuildignore, R/**, tests/**, inst/**, .github/**]
+
+name: Test coverage
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: true
+      matrix:
+        config:
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: covr, tinytest
+
+      - name: Coverage
+        run: |
+          library(tinytest)
+          roxygen2::roxygenize()
+          covr::codecov()
+        shell: Rscript {0}

.github/workflows/pkgdown.yaml

@@ -0,0 +1,38 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [development]
+
+name: pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: Build site
+        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
+        shell: Rscript {0}
+
+      - name: Deploy to GitHub pages 🚀
+        if: github.event_name != 'pull_request'
+        uses: JamesIves/github-pages-deploy-action@v4.5.0
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs

.gitignore

@@ -1,6 +1,47 @@
-.Rproj.user
+# History files
 .Rhistory
+.Rapp.history
+
+# Session Data files
 .RData
-.Rprofile
-inst/doc
-renv/
+
+# User-specific files
+.Ruserdata
+
+# Example code in package build process
+*-Ex.R
+
+# Output files from R CMD build
+/*.tar.gz
+
+# Output files from R CMD check
+/*.Rcheck/
+
+# RStudio files
+.Rproj.user/
+
+# produced vignettes
+vignettes/*.html
+vignettes/*.pdf
+
+# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
+.httr-oauth
+
+# knitr and R markdown default cache directories
+*_cache/
+/cache/
+
+# Temporary files created by R markdown
+*.utf8.md
+*.knit.md
+
+# R Environment Variables
+.Renviron
+
+# Roxygen generated files
+NAMESPACE
+man/
+
+# pkgdown generated files
+docs/
+/docker/.env

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: simTool
 Type: Package
 Title: Conduct Simulation Studies with a Minimal Amount of Source Code
-Version: 1.1.7
+Version: 1.1.8
 Authors@R: person("Marsel", "Scheer", role = c("aut", "cre"), email = "scheer@freescience.de")
 Maintainer: Marsel Scheer <scheer@freescience.de>
 Description: Tool for statistical simulations that have two components. 
@@ -28,9 +28,12 @@ Suggests:
     boot,
     broom,
     rmarkdown,
-    tinytest
+    tinytest,
+    lintr,
+    roxygen2,
+    covr
 License: GPL-3
 VignetteBuilder: knitr
-RoxygenNote: 7.1.1
-URL: https://github.com/MarselScheer/simTool
+RoxygenNote: 7.3.2
+URL: https://marselscheer.github.io/simTool/
 BugReports: https://github.com/MarselScheer/simTool/issues