The workflow expect the output format to be accoring to model setup using the FLEXPART-script python command line tool.
- Setup conda enviroment
conda env create -p ./dust -f environment.yml Activate conda enviroment
conda activate ./dustThe workflow can be configured in the config/config.yaml file. Most important is to set the paths correctly.
- Test that all the files are there:
snakemake -n make_source_contrib_march
- If snakemake is able to resolve all the paths then run the workflow by:
snakemake -j2 make_source_contrib_march
Please have look at what the rules does in the Snakefile.
If you have questions about how about this setup and want to setup a similar workflow the please get in touch at [email protected]