Snakemake Workflow for preprossing of FLEXPART and FLEXDUST output

The workflow expect the output format to be accoring to model setup using the FLEXPART-script python command line tool.

Installation

1. Setup conda enviroment

conda env create -p ./dust -f environment.yml 

Activate conda enviroment

conda activate ./dust

Running the workflow

The workflow can be configured in the config/config.yaml file. Most important is to set the paths correctly.

1. Test that all the files are there:

snakemake -n make_source_contrib_march

2. If snakemake is able to resolve all the paths then run the workflow by:

snakemake -j2 make_source_contrib_march

Please have look at what the rules does in the Snakefile.

If you have questions about how about this setup and want to setup a similar workflow the please get in touch at [email protected]