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Bump the python-dependencies group across 1 directory with 9 updates #2092

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merged 4 commits into from
Jun 12, 2024

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@dependabot dependabot bot commented on behalf of github Jun 11, 2024

Bumps the python-dependencies group with 9 updates in the / directory:

Package From To
pydantic[email] 2.7.2 2.7.3
pydantic-settings 2.2.1 2.3.2
elasticsearch-dsl 7.4.0 7.4.1
elasticsearch 7.17.7 7.17.9
pymongo 4.7.2 4.7.3
aiida-core 2.5.1 2.5.2
pymatgen 2024.5.1 2024.6.4
jarvis-tools 2024.4.10 2024.4.30
mkdocs-material 9.5.25 9.5.26

Updates pydantic[email] from 2.7.2 to 2.7.3

Release notes

Sourced from pydantic[email]'s releases.

v2.7.3 (2024-06-03)

What's Changed

Packaging

Fixes

Full Changelog: pydantic/pydantic@v2.7.2...v2.7.3/*

Changelog

Sourced from pydantic[email]'s changelog.

v2.7.3 (2024-06-03)

GitHub release

What's Changed

Packaging

Fixes

Commits

Updates pydantic-settings from 2.2.1 to 2.3.2

Release notes

Sourced from pydantic-settings's releases.

v2.3.2

What's Changed

New Contributors

Full Changelog: pydantic/pydantic-settings@v2.3.1...v2.3.2

v2.3.1

What's Changed

Full Changelog: pydantic/pydantic-settings@v2.3.0...v2.3.1

v2.3.0

What's Changed

New Contributors

Full Changelog: pydantic/pydantic-settings@v2.2.1...v2.3.0

Commits
  • b5d4534 Prepare release 2.3.2 (#310)
  • b2e84c2 Fix issue with nested model uppercase field name in case insensitive mode (#309)
  • 0a9faca Fix command line help from argparse formatting problem (#307)
  • 813ac94 Initialize CLI source on demand. (#305)
  • 39d5e81 Prepare release 2.3.1 (#302)
  • ad07a57 Fix a regresion in parsing env value for nested dict (#301)
  • bcbfd17 Prepare release 2.3.0 (#297)
  • 4169814 Add CLI Settings Source (#214)
  • e066774 Fix a bug when we have case insentive field in nested model (#294)
  • 6d25cee Fix test_nested_env_delimiter_aliases to use BaseModel in sub model (#286)
  • Additional commits viewable in compare view

Updates elasticsearch-dsl from 7.4.0 to 7.4.1

Release notes

Sourced from elasticsearch-dsl's releases.

7.4.1

  • Fixed DeprecationWarnings that would be emitted from deprecated usages of the body parameter in the Python Elasticsearch client.
Changelog

Sourced from elasticsearch-dsl's changelog.

7.4.1 (2023-03-01)

  • Fixed DeprecationWarnings that would be emitted from deprecated usages of the body parameter in the Python Elasticsearch client.
Commits
  • 227bfd8 Release 7.4.1
  • a946dde Avoid using deprecated 'body' parameter
  • 157d014 [7.x] Fix GitHub Actions install steps
  • 78cca1a [7.x] Install latest version of black that supports Python 2.7
  • 44ed6d2 [7.x] Fix linting issues from new Black formatter
  • ed6d0a1 Document the 'track_total_hits' option for getting complete document counts
  • See full diff in compare view

Updates elasticsearch from 7.17.7 to 7.17.9

Release notes

Sourced from elasticsearch's releases.

7.17.9

  • Client is compatible with Elasticsearch 7.17.9

7.17.8

  • Removed the work-around for a bug in aiohttp when sending HEAD requests. This change was backported from v8.x of elastic-transport.
Commits
  • deccbb7 Use 'ubuntu-20.04' to test Python 3.6 and earlier
  • 1484792 Bumps 7.17 to 7.17.9
  • 9b0d43b Backport aiohttp conditional HEAD bug workaround
  • ebad38c Add release notes for 7.17.5, 7.17.6 and 7.17.7
  • 673a720 Bumps 7.17 to 7.17.8
  • See full diff in compare view

Updates pymongo from 4.7.2 to 4.7.3

Release notes

Sourced from pymongo's releases.

PyMongo 4.7.3

Community notes: https://www.mongodb.com/community/forums/t/pymongo-4-7-3-released/283508

Changelog

Sourced from pymongo's changelog.

Changes in Version 4.7.3

Version 4.7.3 has further fixes for lazily loading modules.

  • Use deferred imports instead of importlib lazy module loading.
  • Improve import time on Windows.
  • Reduce verbosity of "Waiting for suitable server to become available" log message from info to debug.

Issues Resolved ...............

See the PyMongo 4.7.3 release notes in JIRA_ for the list of resolved issues in this release.

.. _PyMongo 4.7.3 release notes in JIRA: https://jira.mongodb.org/secure/ReleaseNote.jspa?projectId=10004&version=39865

Commits
  • 398be02 BUMP 4.7.3
  • 839904f PYTHON-4261 [v4.7] Reduce verbosity of "Waiting for suitable server to become...
  • c7db2c2 PYTHON-4384 [v4.7] Add Custom CodeQL Scanning (#1655)
  • 358a486 PYTHON-4441 [v4.7] Use deferred imports instead of lazy module loading (#1650)
  • fa80968 PYTHON-4473 Optimize find/aggregate/command by avoiding duplicate calls to _g...
  • d4592b6 PYTHON-4455 [v4.7] Improve import time on Windows (#1647)
  • f38dfd6 BUMP 4.7.3.dev0
  • See full diff in compare view

Updates aiida-core from 2.5.1 to 2.5.2

Release notes

Sourced from aiida-core's releases.

AiiDA v2.5.2

See CHANGELOG.md

Changelog

Sourced from aiida-core's changelog.

v2.5.2 - 2024-06-06

Fixes

  • SshTransport: Add channel timeout as argument to exec_command_wait_bytes (#6452) [0c00815b1]
Commits
  • 111d9e8 Release v2.5.2
  • 0c00815 SshTransport: Add channel timeout as argument to exec_command_wait_bytes ...
  • See full diff in compare view

Updates pymatgen from 2024.5.1 to 2024.6.4

Release notes

Sourced from pymatgen's releases.

v2024.6.4

What's Changed

🐛 Bug Fixes

🛠 Enhancements

📖 Documentation

🚧 CI

Full Changelog: materialsproject/pymatgen@v2024.5.31...v2024.6.4

v2024.5.31

What's Changed

🐛 Bug Fixes

🛠 Enhancements

📖 Documentation

🧹 House-Keeping

🧪 Tests

🏷️ Type Hints

🤷‍♂️ Other Changes

... (truncated)

Changelog

Sourced from pymatgen's changelog.

v2024.6.4

🐛 Bug Fixes

🛠 Enhancements

📖 Documentation

🚧 CI

Full Changelog: materialsproject/pymatgen@v2024.5.31...v2024.6.4

2024.5.31

🐛 Bug Fixes

🛠 Enhancements

📖 Documentation

🧹 House-Keeping

... (truncated)

Commits
  • 163cc01 v2024.6.4
  • d38aee2 update tests/files/.pytest-split-durations
  • c55e056 Add new .pmgrc.yaml setting PMG_VASP_PSP_SUB_DIRS: dict[str, str] (#3858)
  • eed8403 Clarify argument shift for SlabGenerator.get_slab (#3748)
  • d1fac20 Add CI run without 'optional' deps installed (#3857)
  • 1a5af18 Fix filter condition for warn msg of unphysical site occupancy in io.cif (#...
  • eccf075 Run CI with two different uv resolution strategies: highest and `lowest-d...
  • 2982968 v2024.5.31
  • c70e5b8 Add type annotations for io.vasp.outputs (#3776)
  • cd8846b Update reqs.
  • Additional commits viewable in compare view

Updates jarvis-tools from 2024.4.10 to 2024.4.30

Release notes

Sourced from jarvis-tools's releases.

v2024.4.30

  • VASP OUTCAR parser for making ALIGNN-FF outputs

v2024.4.20

  • Update surface builder
  • Outcar parser update
  • Get ALIGNN features and mineral name
  • Update describer
Commits

Updates mkdocs-material from 9.5.25 to 9.5.26

Release notes

Sourced from mkdocs-material's releases.

mkdocs-material-9.5.26

  • Fixed #7232: Tab switches on scroll when linking tabs (9.5.19 regression)
  • Fixed #7230: Blog author avatar broken when referring to local file
Changelog

Sourced from mkdocs-material's changelog.

mkdocs-material-9.5.26 (2024-06-06)

  • Fixed #7232: Tab switches on scroll when linking tabs (9.5.19 regression)
  • Fixed #7230: Blog author avatar broken when referring to local file

mkdocs-material-9.5.25+insiders-4.53.11 (2024-05-27)

  • Fixed projects plugin crashing when serving before building subprojects

mkdocs-material-9.5.25 (2024-05-27)

  • Fixed #7209: Tags plugin crashing on numeric tags

mkdocs-material-9.5.24+insiders-4.53.10 (2024-05-20)

  • Fixed projects plugin crashing in serve mode when disabled
  • Fixed projects plugin crashing when building nested projects

mkdocs-material-9.5.24+insiders-4.53.9 (2024-05-20)

  • Fixed #7191: Tags listings not rendering when toc_depth is changed

mkdocs-material-9.5.24 (2024-05-20)

  • Fixed #7187: Version selector title rendering issue

mkdocs-material-9.5.23 (2024-05-15)

  • Fixed #7183: Edge case in anchor navigation when using instant navigation
  • Fixed #6436: Version selector not showing version alias

mkdocs-material-9.5.22 (2024-05-12)

  • Fixed #7170: Copy button adds empty lines for line spans (9.5.18 regression)
  • Fixed #7160: Version switching doesn't stay on page (9.5.5 regression)
  • Fixed #5619: Links in Mermaid.js diagrams not discernible

mkdocs-material-9.5.21 (2024-05-03)

  • Fixed #7133: Ensure latest version of Mermaid.js is used
  • Fixed #7125: Added warning for dotfiles in info plugin

mkdocs-material-9.5.20 (2024-04-29)

  • Fixed deprecation warning in privacy plugin (9.5.19 regression)
  • Fixed #7119: Tags plugin emits deprecation warning (9.5.19 regression)
  • Fixed #7118: Social plugin crashes if fonts are disabled (9.5.19 regression)
  • Fixed #7085: Social plugin crashes on Windows when downloading fonts

mkdocs-material-9.5.19+insiders-4.53.8 (2024-04-26)

... (truncated)

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Bumps the python-dependencies group with 9 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [pydantic[email]](https://github.com/pydantic/pydantic) | `2.7.2` | `2.7.3` |
| [pydantic-settings](https://github.com/pydantic/pydantic-settings) | `2.2.1` | `2.3.2` |
| [elasticsearch-dsl](https://github.com/elasticsearch/elasticsearch-dsl-py) | `7.4.0` | `7.4.1` |
| [elasticsearch](https://github.com/elastic/elasticsearch-py) | `7.17.7` | `7.17.9` |
| [pymongo](https://github.com/mongodb/mongo-python-driver) | `4.7.2` | `4.7.3` |
| [aiida-core](https://github.com/aiidateam/aiida-core) | `2.5.1` | `2.5.2` |
| [pymatgen](https://github.com/materialsproject/pymatgen) | `2024.5.1` | `2024.6.4` |
| [jarvis-tools](https://github.com/usnistgov/jarvis) | `2024.4.10` | `2024.4.30` |
| [mkdocs-material](https://github.com/squidfunk/mkdocs-material) | `9.5.25` | `9.5.26` |



Updates `pydantic[email]` from 2.7.2 to 2.7.3
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](pydantic/pydantic@v2.7.2...v2.7.3)

Updates `pydantic-settings` from 2.2.1 to 2.3.2
- [Release notes](https://github.com/pydantic/pydantic-settings/releases)
- [Commits](pydantic/pydantic-settings@v2.2.1...v2.3.2)

Updates `elasticsearch-dsl` from 7.4.0 to 7.4.1
- [Release notes](https://github.com/elasticsearch/elasticsearch-dsl-py/releases)
- [Changelog](https://github.com/elastic/elasticsearch-dsl-py/blob/main/Changelog.rst)
- [Commits](elastic/elasticsearch-dsl-py@v7.4.0...v7.4.1)

Updates `elasticsearch` from 7.17.7 to 7.17.9
- [Release notes](https://github.com/elastic/elasticsearch-py/releases)
- [Commits](elastic/elasticsearch-py@v7.17.7...v7.17.9)

Updates `pymongo` from 4.7.2 to 4.7.3
- [Release notes](https://github.com/mongodb/mongo-python-driver/releases)
- [Changelog](https://github.com/mongodb/mongo-python-driver/blob/master/doc/changelog.rst)
- [Commits](mongodb/mongo-python-driver@4.7.2...4.7.3)

Updates `aiida-core` from 2.5.1 to 2.5.2
- [Release notes](https://github.com/aiidateam/aiida-core/releases)
- [Changelog](https://github.com/aiidateam/aiida-core/blob/v2.5.2/CHANGELOG.md)
- [Commits](aiidateam/aiida-core@v2.5.1...v2.5.2)

Updates `pymatgen` from 2024.5.1 to 2024.6.4
- [Release notes](https://github.com/materialsproject/pymatgen/releases)
- [Changelog](https://github.com/materialsproject/pymatgen/blob/master/docs/CHANGES.md)
- [Commits](materialsproject/pymatgen@v2024.5.1...v2024.6.4)

Updates `jarvis-tools` from 2024.4.10 to 2024.4.30
- [Release notes](https://github.com/usnistgov/jarvis/releases)
- [Commits](usnistgov/jarvis@v2024.4.10...v2024.4.30)

Updates `mkdocs-material` from 9.5.25 to 9.5.26
- [Release notes](https://github.com/squidfunk/mkdocs-material/releases)
- [Changelog](https://github.com/squidfunk/mkdocs-material/blob/master/CHANGELOG)
- [Commits](squidfunk/mkdocs-material@9.5.25...9.5.26)

---
updated-dependencies:
- dependency-name: pydantic[email]
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: pydantic-settings
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: elasticsearch-dsl
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: elasticsearch
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: pymongo
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: aiida-core
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: pymatgen
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-dependencies
- dependency-name: jarvis-tools
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
- dependency-name: mkdocs-material
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-dependencies
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added the dependency_updates Issues pertaining to updates to our dependencies that are breaking the eager build label Jun 11, 2024
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Let's keep the "old" pymatgen version, at least until aiidateam/aiida-core#6472 has been merged and incorporated in a public version of aiida-core.

requirements-client.txt Outdated Show resolved Hide resolved
CasperWA and others added 2 commits June 12, 2024 15:20
Bumps [pytest](https://github.com/pytest-dev/pytest) from 8.2.1 to 8.2.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.2.1...8.2.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:development
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
requirements-client.txt Outdated Show resolved Hide resolved
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codecov bot commented Jun 12, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 90.69%. Comparing base (aaab798) to head (a1fa69e).

Additional details and impacted files
@@           Coverage Diff           @@
##           master    #2092   +/-   ##
=======================================
  Coverage   90.69%   90.69%           
=======================================
  Files          75       75           
  Lines        4740     4740           
=======================================
  Hits         4299     4299           
  Misses        441      441           
Flag Coverage Δ
project 90.69% <ø> (ø)
validator 90.69% <ø> (ø)

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@ml-evs ml-evs merged commit 983b98f into master Jun 12, 2024
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@ml-evs ml-evs deleted the dependabot/pip/master/python-dependencies-b5ecca602d branch June 12, 2024 15:11
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