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Further formatting fixes to the PC2 and boundary-layer scheme docs ported from the UMDPs. #523

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Further formatting fixes to the PC2 and boundary-layer scheme docs ported from the UMDPs. #523

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6cfd79d
Added new section for cloud-schemes and new doc within that for PC2.
MichaelWhitall Apr 1, 2026
1b35c04
Imported the PC2 cloud-scheme latex source from the UMDPs.
MichaelWhitall Apr 1, 2026
a513efb
Imported include files used by the PC2 cloud-scheme latex source.
MichaelWhitall Apr 1, 2026
39312d8
Ran pandoc -s -f latex -t rst -o UMDP30_PC2CloudScheme.rst UMDP30_P…
MichaelWhitall Apr 1, 2026
6c02d25
Attempting to import the figures.
MichaelWhitall Apr 2, 2026
c2d7729
Deleted placeholder PC2 description.
MichaelWhitall Apr 2, 2026
3aa778f
Deleted the latex source now we've converted to .rst
MichaelWhitall Apr 2, 2026
04ed58a
Convert the figures to .svg and import them correctly.
MichaelWhitall Apr 2, 2026
c2d44a5
Trying to get section numbering and cross-referencing to work (not wo…
MichaelWhitall Apr 2, 2026
ceadd31
Further attempt to cross-reference section.
MichaelWhitall Apr 2, 2026
86c8a8e
Still fiddling with cross-referencing a section.
MichaelWhitall Apr 2, 2026
340afbd
Just reference sections by title (giving up on tryyying to number them).
MichaelWhitall Apr 2, 2026
1d3d134
Reverted unneeded changes to conf.py
MichaelWhitall Apr 2, 2026
f55bc31
Rolled-out fix for cross-referencing across all sections.
MichaelWhitall Apr 2, 2026
0643542
First attempt to get an equation reference to work.
MichaelWhitall Apr 2, 2026
965e59a
Finally got equation numbering and referencing to work using math_jax…
MichaelWhitall Apr 2, 2026
2a5b5b0
Corrected equation labelling and referencing across the doc using pyt…
MichaelWhitall Apr 7, 2026
2910393
Went back to the doc as it was before I corrected the section cross-r…
MichaelWhitall Apr 7, 2026
1ddac03
Split-up latex aligned regions into separate math blocks so that it i…
MichaelWhitall Apr 7, 2026
f6d5756
Now fixing equation labels when they don't appear at the end of the m…
MichaelWhitall Apr 7, 2026
fc60e42
Fixed problems due to wrong indent in bullet-point lists.
MichaelWhitall Apr 7, 2026
2756298
Replaced very non-standard labelling of in-line equations (which hadn…
MichaelWhitall Apr 7, 2026
facce93
Miscellaneous fixes: (a) Avoid duplicate section title and label 'num…
MichaelWhitall Apr 7, 2026
bcc316c
Deleted old .eps copies of the figures.
MichaelWhitall Apr 10, 2026
e6f2975
Fixed tables using script to convert to list-table.
MichaelWhitall Apr 11, 2026
c88b695
Re-checked-out from earlier version and reran all the scripts to re-a…
MichaelWhitall Apr 11, 2026
9b61e4e
Re-import the latex file, this time with the .bib file so we can try …
MichaelWhitall Apr 20, 2026
640dc90
Re-importing include files used by the latex doc.
MichaelWhitall Apr 20, 2026
5fac9fb
Point to included tex and bib files in the current directory.
MichaelWhitall Apr 20, 2026
b29b65f
Re-ran pandoc then re-applied corrections script from scratch, now au…
MichaelWhitall Apr 20, 2026
769b468
Reran pandoc and then applied only automated corrections.
MichaelWhitall Apr 20, 2026
3894d6f
Applied all manual corrections in 1 commit, for convenience of re-app…
MichaelWhitall Apr 20, 2026
a5db077
Fixed bibliography and references.
MichaelWhitall Apr 21, 2026
ebd2a4c
Removed spurious ensuremath directives in equations.
MichaelWhitall Apr 22, 2026
3e481bc
Added code-owner for the ported PC2 documentation.
MichaelWhitall Apr 22, 2026
b9b31bd
Added LFRic copyright notice.
MichaelWhitall Apr 22, 2026
9f2c1a7
Split-up lines longer than 80 characters, as-per the style guide.
MichaelWhitall Apr 23, 2026
b34e69a
Changed subsubsection header underline format as-per the style guide.
MichaelWhitall Apr 23, 2026
c6a4665
Preparatory changes for adding boundary-layer / turbulence documentat…
MichaelWhitall Apr 23, 2026
f03116d
Copied in the UMDP 024 source, including figures and include files.
MichaelWhitall Apr 23, 2026
c9384fb
Copied-in the bibtex file (and change the .tex file to point to the l…
MichaelWhitall Apr 23, 2026
42b6b0d
Converted figures to .svg.
MichaelWhitall Apr 23, 2026
6738973
Ran pandoc to convert the .tex file to .rst.
MichaelWhitall Apr 23, 2026
159e998
Fixed aligned equation regions.
MichaelWhitall Apr 23, 2026
b7cf81f
Fixed tables.
MichaelWhitall Apr 23, 2026
cce11ea
Fixed figures.
MichaelWhitall Apr 23, 2026
6cb465c
Improved automated handling of figures and section cross-referencing.
MichaelWhitall Apr 24, 2026
2d750b7
Re-applied remaining manual corrections.
MichaelWhitall Apr 24, 2026
22d0d55
Fixed script problem that broke table caption, then re-applied.
MichaelWhitall Apr 24, 2026
dd3429e
Updated table fixing script and reran. Now makes list tables instead…
MichaelWhitall Apr 24, 2026
542e716
Fixed bibliography and citations.
MichaelWhitall Apr 25, 2026
e1263a5
Fixed equation cross-referencing.
MichaelWhitall Apr 25, 2026
5d31330
Restored lost labels on multi-line equation blocks.
MichaelWhitall Apr 25, 2026
cec1d90
Fixed figure cross-referencing.
MichaelWhitall Apr 27, 2026
adc8e2f
Corrected multi-panel figure widths (needs to be % of width of curren…
MichaelWhitall Apr 27, 2026
c188b4d
Fixed section cross-referencing.
MichaelWhitall Apr 27, 2026
086e265
Fixed multi-line in-line math blocks with incorrect indentation.
MichaelWhitall Apr 27, 2026
4f12482
Fixed tables with no name or title (altered the list-table conversion…
MichaelWhitall Apr 27, 2026
6b86a33
Added copyright header.
MichaelWhitall Apr 27, 2026
59ba524
Changed subsubsection header underline style as-per the style guide.
MichaelWhitall Apr 27, 2026
8da40a8
Split lines > 80 characters, as per the style guide.
MichaelWhitall Apr 27, 2026
a64ad01
Removed backticks from the bibliography (copied-in from the bibtex fi…
MichaelWhitall Apr 27, 2026
de9efda
Manual change: specify 2 header rows in one of the tables.
MichaelWhitall Apr 27, 2026
98be76e
Revert 80-char line-width limit to section headers (it breaks them)
MichaelWhitall Apr 29, 2026
d933230
Fixed table cross-referencing.
MichaelWhitall Apr 29, 2026
0b399d7
Fixed table cross-referencing.
MichaelWhitall Apr 29, 2026
fb4e3f1
Added warning about doc being a work-in-progress / containing UM-isms.
MichaelWhitall Apr 29, 2026
cc6ace0
Added warning at top of file about this being a work-in-progress / co…
MichaelWhitall Apr 29, 2026
4bc3b52
Rotated figure so it appears the right way up in the doc.
MichaelWhitall Apr 29, 2026
2838a4e
Ran updated version of the script (reinstates aligned math blocks for…
MichaelWhitall Apr 30, 2026
8f6563c
Reinstated manual corrections needed after script.
MichaelWhitall Apr 30, 2026
93fb4a8
Correction to manual correction: delete stray trailing whitespace.
MichaelWhitall Apr 30, 2026
ae76786
Re-applied after further correction to the script to mop-up spurious …
MichaelWhitall Apr 30, 2026
4619723
Re-applied scripts with corrections to aligned math handling (now pre…
MichaelWhitall Apr 30, 2026
00191b1
Removed latex math \mbox and \tiny commands that aren't supported in …
MichaelWhitall May 13, 2026
7ed49f0
Replaced \rm with \mathrm{}.
MichaelWhitall May 13, 2026
735e865
Also replace \bf, \cal with \mathrm{}, \mathcal{}.
MichaelWhitall May 13, 2026
ae65488
Sanitized non-ASCII characters.
MichaelWhitall May 13, 2026
649a1bd
Reran script from scratch (changes line wrapping in a couple of places).
MichaelWhitall May 13, 2026
e5af889
Renamed 'bldoc' to 'bl_scheme_doc'.
MichaelWhitall May 13, 2026
509cbfd
Re-applied the scripts as they've been updated to fix additional prob…
MichaelWhitall May 13, 2026
768d6c0
Added file containing manual corrections diff for ease of re-applying.
MichaelWhitall May 13, 2026
a365ab5
Auto-number footnotes.
MichaelWhitall May 13, 2026
2f479f5
Reinstated affiliation footnote in author list (lost by pandoc).
MichaelWhitall May 13, 2026
8bc129b
Reinstated placeholders for inter-doc links (using existing custom ma…
MichaelWhitall May 14, 2026
f8720dc
Added placeholders for inter-doc cross-referencing (using existing in…
MichaelWhitall May 14, 2026
e5fcb28
Deleted stray \noindent in math block (not supported by mathjax).
MichaelWhitall May 14, 2026
ed849bc
Fixed spurious nested math.
MichaelWhitall May 14, 2026
772b633
Manually fixed unsupported \raisebox construct.
MichaelWhitall May 14, 2026
3b9ff09
Converted figures using inkscape instead of image magick, to restore …
MichaelWhitall May 15, 2026
aaec813
Reverted needless splitting up of some math aligned regions (where mu…
MichaelWhitall May 15, 2026
566ef5c
Manual fix: insert F in place of custom macro \radf in caption math.
MichaelWhitall May 15, 2026
24ca5f0
Further corrections to math and equation references inside re-importe…
MichaelWhitall May 15, 2026
88d3e81
Removed trailing whitespace.
MichaelWhitall May 20, 2026
7f4dc56
Changed format of UMDP reference placeholders to avoid lint warnings.
MichaelWhitall May 20, 2026
8feae1a
Remove further trailing white-space instances created by splitting lo…
MichaelWhitall May 20, 2026
72f006b
Fixed remaining latex custom macro instances \zh, zhpar imported in f…
MichaelWhitall May 20, 2026
65c766e
Further change to UMDP reference placeholder format.
MichaelWhitall May 20, 2026
c6de814
Applied latest version of post-pandoc corrections script. Changes: (…
MichaelWhitall May 20, 2026
fd90e88
Further format corections: fixed inline math inside bold or italic re…
MichaelWhitall May 23, 2026
649afe8
Fixed parsing of bibtex with latex special characters containing quot…
MichaelWhitall May 28, 2026
f17d43e
Re-applied latest version of format corrections scripts (fix in-line …
MichaelWhitall May 28, 2026
3924d23
Changed the script to add header-rows: 1 to tables by default, so rem…
MichaelWhitall May 28, 2026
b121878
Updated script to add header-rows: 1 in tables by default, then remov…
MichaelWhitall May 28, 2026
737d1f6
Merging in the branch for the BL UMDP.
MichaelWhitall May 28, 2026
3194c8b
Deleted original latex source and .eps figures.
MichaelWhitall May 28, 2026
af31f34
Changed label for dz_param equation in the PC2 doc to avoid clash wit…
MichaelWhitall May 28, 2026
b3d9491
Merge up to head of main.
MichaelWhitall May 28, 2026
c58bc0c
Merge in fix from head of main (my name had been accidentally deleted…
MichaelWhitall May 28, 2026
bf8992b
Tightened-up script to replace missed instances of \rm with \mathrm etc.
MichaelWhitall May 29, 2026
f78e5c3
Tightened-up script to replace missed instances of \rm with \mathrm etc.
MichaelWhitall May 29, 2026
68a2f6b
Sync with updates to vn3.1_port_pc2_doc
MichaelWhitall May 29, 2026
6f0e755
Sync with updates to vn3.1_port_bl_doc
MichaelWhitall May 29, 2026
e145237
Merged in head of main and fixed conflicts in UMDP30_PC2.
MichaelWhitall Aug 6, 2026
7e16720
Repaired the broken UM code-structure diagram and made the coloured t…
MichaelWhitall Aug 21, 2026
410a73d
Sync with vn3.1_port_pc2_doc.
MichaelWhitall Aug 21, 2026
efd895f
Moved the specification of text colours into the .rst file where they…
MichaelWhitall Aug 21, 2026
8c15121
Sync with vn3.1_port_pc2_doc.
MichaelWhitall Aug 21, 2026
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