neuroglancer-python

Installation

git clone https://github.com/MetaCell/neuroglancer-python
cd neuroglancer-python
pip install -e .

git clone -b develop https://github.com/MetaCell/neuroglancer/tree/develop
cd neuroglancer
npm i
npm run build-python
pip install .

Usage

See examples folder. There is also a makefile that can be used by running make all to generate example data, run the server, and open the browser. You need to modify the variables in the makefile to point to the correct paths.

Note

While PRs have not yet been merged, you can install the neuroglancer Python package from the forked repo of neuroglancer at https://github.com/MetaCell/neuroglancer/tree/develop. See the installation instructions above.

Regression tests

cd tests
npm install
npm run test

You can update constants.js to point to some different data.

Running individual tests

npm install jest --global
cd tests
jest MATCH --config=jest.config.js

where MATCH is a substring of the test name.

Running local server

npx http-server FOLDER_WITH_DATA/ --cors=authorization