Merge pull request #35 from MetaSys-LISBP/dev

Dev

.github/workflows/deploy_test_pypi.yml

@@ -4,15 +4,15 @@ on:
   release:
     types: [ published ]
 
-jobs:
-  publish-service-client-package:
-    runs-on: ubuntu-latest
-    steps:
-      - name: Publish PyPi package
-        uses: code-specialist/pypi-poetry-publish@v1
-        with:
-          PACKAGE_DIRECTORY: "./physiofit"
-          PYTHON_VERSION: "3.10"
-          ACCESS_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-          PUBLISH_REGISTRY_PASSWORD: ${{ secrets.TEST_PYPI_API_TOKEN }}
-          PUBLISH_REGISTRY: "https://test.pypi.org/legacy/"
+steps:
+  - name: Checkout Repository # You must checkout your repository first.
+    uses: actions/checkout@v3
+
+  - name: Publish Package
+    uses: celsiusnarhwal/poetry-publish@v2
+    with:
+      python-version: 3.11
+      poetry-version: 1.3.1
+      token: ${{ secrets.TEST_PYPI_API_TOKEN }}
+      build: true
+      repo: "testpypi"

physiofit/__init__.py

@@ -1,3 +1,3 @@
-"""Version changes handled by github action"""
+import importlib.metadata
 
-__version__ = "3.0.4"
+__version__ = importlib.metadata.version("physiofit")

physiofit/base/io.py

@@ -321,7 +321,6 @@ def output_recap(self, export_path: str):
         final_df.to_csv(f"{str(Path(export_path))}/summary.csv")
 
 
-
     def output_report(self, fitter, export_path: str |list = None):
         """
         Handle creation and export of the report containing stats from monte

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "physiofit"
-version = "3.0.4"
+version = "3.0.5"
 description = "Calculate extracellular fluxes from metabolite concentrations and biomass data"
 authors = ["llegregam <[email protected]>"]
 license = "GNU General Public License (GPL)"