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Changed image to code block #48

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Oct 24, 2023
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Changed image to code block #48

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24 changes: 20 additions & 4 deletions docs/models.rst
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Expand Up @@ -219,10 +219,26 @@ testing purposes. Here is an example of how you can test the model: ::
model = ChildModel(data=test_data)
print(model)

If you now run the file, you should have a standard output in your console that looks like:

.. image:: _static/models/standard_out1.jpeg
:scale: 100%
If you now run the file, you should have a standard output in your console that looks like: ::

Selected model: Tutorial model
Model data:
time experiments X Glucose
0 0 A 0.5 12.0
1 1 A 0.8 11.6
2 2 A 1.2 11.0
3 3 A 1.8 10.2
Experimental matrix:
[['A' 0.5 12.0]
['A' 0.8 11.6]
['A' 1.2 11.0]
['A' 1.8 10.2]]
Time vector: [0 1 2 3]
Name vector: ['X', 'Glucose']
Biomass & Metabolites: ['Glucose']
Parameters to estimate: None
Fixed parameters: None
Bounds: None

The next step is to define the parameters (used for simulationsand optimization). PhysioFit supports two types of parameters (**parameters to estimate** and **fixed parameters**) which are detailed below.

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