feat: update all models

[mihai-sysbio]

This PR supersedes the other two PRs created with the same purpose, #4 an #7, which will be closed in favor of this one.

With this PR we fetch the latest (pre-)releases from all the models - model yml file and all existing annotation tsv files. The single exception is Yeast-GEM, where the latest release 8.5.0 changes the subsystems in a way that breaks compatibility with the maps. For this model, we will wait for the next release.

The file Yeast-GEM/subsystemSVG.tsv has been sorted alphabetically and the commented-out lines were removed.

From now on, all files in /integrated-models will be stored without Git LFS, in order to facilitate diff-ing and file content inspection.

[inghylt]

Things seems to work fine for Human and Yeast Gem. For the other models, gem-browser and interaction-partner random selection does not seem to be working correctly. Nothing is returned and the page just keeps on loading. And when trying to use the search bar, no/few matches are found. Some pages work but without data, e.g, http://localhost/explore/Mouse-GEM/gem-browser/subsystem/miscellaneous, while others have errors, e.g. http://localhost/explore/Worm-GEM/gem-browser/gene/M110.3 (I'm assume that gene ID:s are not updated)

[mihai-sysbio]

Thank you @inghylt for noticing this. There is a version field in both the integratedModels.json and each model yml file. Since this is an eager integration of the updated models, the yml files have an empty version. Commit
902e0b8 addresses this. In the normal case of integrating updates, this should not be a problem.

[inghylt]

Nice, from what I can tell it seems to work fine except the map ID:s which we will fix in upcoming issue. Left some suggestions to update the descriptions

[e0]

I tested this using the feat/new-TSV-MA-908 branch from the neo4j-data-generation repo. Besides some unrelated issues (gene rule parsing) I think it looks good! Left a comment but it's not something that I think we should do in this PR even if we do want to address it.

[nanjiangshu]

I feel like the sentence reads better with filename must has an extension svg and with ...

[nanjiangshu]

The PR looks great! I have just left a few minor comments.

In addition, I have tested the deployment with the latest branch feat/new-TSV-MA-908 for the neo4j-data-generation repo, and it seems all features work as expected.
Especially for

1. GeneRule with double brackets (( /explore/Human-GEM/gem-browser/reaction/MAR00080
2. Coloring of gene boxes after setting Data Overlay on the 2D map viewer
3. GEM comparison

[mihai-sysbio]

Thank you all for the reviews. I hope the last commit isn't breaking things, so I'm going to merge.
I still think it would be nicer to have an improved solution to how the *SVG.tsv files are handled, but let's do that in #9 to keep the focus of this PR on updating the model files.

[mihai-sysbio]

I could not find any SVG for Chondroitin sulfate degradation so the reference to it in Human-GEM as a subsystem SVG had to be removed in 811457d.