Code for analysis of the MSC dataset

This codebase includes T1 segmentation, surface-based registration, myelin map creation, BOLD preprocessing, BOLD fc-processing, cifti creation, infomap-based network detection, gradient-based parcellation, and data reliability testing.

This code is provided "as is", without any warranty. We cannot provide technical support for this code. For general questions, please contact Nico Dosenbach ([email protected]).


Additional required packages not included here:

4dfp utilities: ftp://imaging.wustl.edu/pub/raichlab/4dfp_tools/
Freesurfer: https://surfer.nmr.mgh.harvard.edu/
FSL: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki
Connectome workbench: http://www.humanconnectome.org/software/connectome-workbench.html
Infomap: www.mapequation.org
Brain connectivity toolbox: http://www.brain-connectivity-toolbox.net