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readme.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
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<p class="p1">This is a NEURON version of the CA3 pyramidal cell model of Traub et al. 1991 (J. Neurophysiol. 66(2): 635-650).</p>
<p class="p2"><br></p>
<p class="p1">The Bash shell script MakeSpecial.sh will create the special executable with the required mechanisms to simulate the model. Location: subdirectory x86_64 (created after running MakeSpecial.sh). This assumes NEURON is installed and nrnivmodl is in the executable PATH.</p>
<p class="p2"><br></p>
<p class="p1">Run the following command from the root directory for a graphical interface allowing to generate each figure:<span class="Apple-converted-space"> </span></p>
<p class="p2"><br></p>
<p class="p1">./x86_64/special mosinit.hoc -</p>
<p class="p2"><br></p>
<p class="p1">Alternatively, each of the files GenerateFigX.hoc (where X = 3, 4, … 10) will generate the data for the corresponding figure in Traub et al. (1991):</p>
<p class="p2"><br></p>
<p class="p1">./x86_64/special GenerateFigX.hoc -</p>
<p class="p2"><br></p>
<p class="p1">To plot the results, start Matlab, switch to the appropriate figure directory, for example for figure 3:</p>
<p class="p2"><br></p>
<p class="p1">./Traub_Figures/TraubFigure3</p>
<p class="p2"><br></p>
<p class="p1">and run the corresponding Matlab script:</p>
<p class="p2"><br></p>
<p class="p1">Graph_fig3Traub.m</p>
<p class="p2"><br></p>
<p class="p1">Comparison with the original paper figures are in the Traub_Figures>CompareOriginalFigs subdirectory</p>
<p class="p2"><br></p>
<p class="p2"><br></p>
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