GitHub - ModelDBRepository/266905: CA3 hippocampal pyramidal neuron with voltage-clamp intrinsic conductance data (Traub et al 1991)

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CA3 hippocampal pyramidal neuron with voltage-clamp intrinsic conductance data (Traub et al 1991)

modeldb.science/266905

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
Traub_Figures		Traub_Figures
mods		mods
GenerateFig10.hoc		GenerateFig10.hoc
GenerateFig3.hoc		GenerateFig3.hoc
GenerateFig4.hoc		GenerateFig4.hoc
GenerateFig5.hoc		GenerateFig5.hoc
GenerateFig6.hoc		GenerateFig6.hoc
GenerateFig7.hoc		GenerateFig7.hoc
GenerateFig8.hoc		GenerateFig8.hoc
GenerateFig9.hoc		GenerateFig9.hoc
MakeSpecial.sh		MakeSpecial.sh
mosinit.hoc		mosinit.hoc
readme.html		readme.html
traub.hoc		traub.hoc

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<p class="p1">This is a NEURON version of the CA3 pyramidal cell model of Traub et al. 1991 (J. Neurophysiol. 66(2): 635-650).</p>
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<p class="p1">The Bash shell script MakeSpecial.sh will create the special executable with the required mechanisms to simulate the model. Location: subdirectory x86_64 (created after running MakeSpecial.sh). This assumes NEURON is installed and nrnivmodl is in the executable PATH.</p>
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<p class="p1">Run the following command from the root directory for a graphical interface allowing to generate each figure:<span class="Apple-converted-space"> </span></p>
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<p class="p1">./x86_64/special mosinit.hoc -</p>
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<p class="p1">Alternatively, each of the files GenerateFigX.hoc (where X = 3, 4, … 10) will generate the data for the corresponding figure in Traub et al. (1991):</p>
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<p class="p1">./x86_64/special GenerateFigX.hoc -</p>
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<p class="p1">To plot the results, start Matlab, switch to the appropriate figure directory, for example for figure 3:</p>
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<p class="p1">./Traub_Figures/TraubFigure3</p>
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<p class="p1">and run the corresponding Matlab script:</p>
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<p class="p1">Graph_fig3Traub.m</p>
<p class="p2"><br></p>
<p class="p1">Comparison with the original paper figures are in the Traub_Figures&gt;CompareOriginalFigs subdirectory</p>
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