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Suggestion: separate duplicate names of parameters, variables, and auxiliary variables #2

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Suggestion: separate duplicate names of parameters, variables, and auxiliary variables #2

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8 changes: 4 additions & 4 deletions NeuronKATP_Stoch.ode
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ wiener w

# Parameter values
par ip0=0.75
par gLs=0.1 gLd=0.1 gNa=30 gKdr=15 gCa=9 gKahp=0.8 gKC=15
par gLs=0.1 gLd=0.1 gNa=30 gKdr=15 gCa=9 gKahp=0.8 par_gKC=15
par VNa=60 VCa=80 VK=-75 VL=-60 Vsyn=0
par gc=2.1 pp=0.5 Cm=3
par alphac=2 betac=0.1
Expand Down Expand Up @@ -51,7 +51,7 @@ varnoise=sqrt((alphas*(1 - s)+betas*s)/(taus*natp))
# Output cols are t, ODEs, AUXs in order, here:
# t versus vd cad hs ns sd cd qd gqk gkc
Vs'=(-gLs*(Vs-VL)-gNa*(Minfs(Vs)^2)*hs*(Vs-VNa)-gKdr*ns*(Vs-VK)-gkatp*natp*poatp*(Vs-VK)+(gc/pp)*(Vd-Vs)+Ip0/pp)/Cm
Vd'=(-gLd*(Vd-VL)-ICad-gKahp*qd*(Vd-VK)-gKC*cd*chid*(Vd-VK)-gkatp*natp*poatp*(Vd-VK)+(gc*(Vs-Vd))/(1.0-pp))/Cm
Vd'=(-gLd*(Vd-VL)-ICad-gKahp*qd*(Vd-VK)-par_gKC*cd*chid*(Vd-VK)-gkatp*natp*poatp*(Vd-VK)+(gc*(Vs-Vd))/(1.0-pp))/Cm
Cad'= -0.13*ICad-0.075*Cad
hs'= alphahs(Vs)-(alphahs(Vs)+betahs(Vs))*hs
ns'= alphans(Vs)-(alphans(Vs)+betans(Vs))*ns
Expand All @@ -63,9 +63,9 @@ s' = (alphas*(1-s)-betas*s)/taus + noise*w*varnoise
# auxiliary equationns
aux Ica=ICad
aux gkq = gKahp*qd
aux gkc = gKC*cd*chid
aux gkc = par_gKC*cd*chid
aux ikatp = gkatp*natp*poatp*(Vs-VK)
aux iatp=iatp*s
aux iatp_s=iatp*s

# For stochastics, CVODE can not be used.
@ maxstor=1000000, total=1.0e4, bounds=10000, xlo=0, xhi=1.0e4, ylo=-90, yhi=60
Expand Down