GitHub - MonashBioinformaticsPlatform/RNAseq_workshop_2024

Visit the Workshop page. This link directs to the website for this workshop

To build this book check instructions

Name		Name	Last commit message	Last commit date
Latest commit History 170 Commits
.github/workflows		.github/workflows
files		files
images		images
renv		renv
.DS_Store		.DS_Store
.Rhistory		.Rhistory
.Rprofile		.Rprofile
.gitignore		.gitignore
01-01-Intro.Rmd		01-01-Intro.Rmd
02-01-ExperimentalDesign.html		02-01-ExperimentalDesign.html
02-01-ExperimentalPlanning.Rmd		02-01-ExperimentalPlanning.Rmd
02-02-ExperimentFactors.Rmd		02-02-ExperimentFactors.Rmd
03-01-LibraryPrep.Rmd		03-01-LibraryPrep.Rmd
04-01-PipelineOverview.Rmd		04-01-PipelineOverview.Rmd
04-02-Pipeline-FASTQ-files.Rmd		04-02-Pipeline-FASTQ-files.Rmd
04-03-Pipeline-demultiplexing.Rmd		04-03-Pipeline-demultiplexing.Rmd
04-04-Pipeline-fastqc.Rmd		04-04-Pipeline-fastqc.Rmd
04-05-Pipeline-mapping-and-qc.Rmd		04-05-Pipeline-mapping-and-qc.Rmd
04-06-Pipeline-counting.Rmd		04-06-Pipeline-counting.Rmd
04-07-Pipeline-ways-to-run-a-pipeline.Rmd		04-07-Pipeline-ways-to-run-a-pipeline.Rmd
05-01-DEG.Rmd		05-01-DEG.Rmd
06-01-PostAnalysis.Rmd		06-01-PostAnalysis.Rmd
06-01-PostAnalysis.md		06-01-PostAnalysis.md
404.html		404.html
README.md		README.md
RNA_MGBP.Rproj		RNA_MGBP.Rproj
_bookdown.yml		_bookdown.yml
_common.R		_common.R
_output.yml		_output.yml
book.bib		book.bib
build.sh		build.sh
buildbook_instructions.md		buildbook_instructions.md
getting-started.html		getting-started.html
igv-manual-counts.html		igv-manual-counts.html
index.Rmd		index.Rmd
packages.bib		packages.bib
preamble.tex		preamble.tex
renv.lock		renv.lock
style.css		style.css
title.html		title.html

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