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Update README.md
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spcspin committed Aug 30, 2023
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Expand Up @@ -166,9 +166,10 @@ mkdir sif
cd sif
cwl-docker-extract --singularity . Pathto/workflow/main.cwl
```
### Step 1. Set the environment variable in conda env_var.sh file.
### Step 2. Set the environment variable in conda env_var.sh file.
Just like the conda environment Step 2.
However, the `APPTAINER_CACHEDIR` still have to be setted by each user, because it has to be unique to user. [Ref.](https://docs.sylabs.io/guides/latest/user-guide/build_env.html)

## Example
In the test example, we utilize the yeast data as an example. The example folder contains the reference sequence of R64, and the processed SRA accession is SRR23631020.

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