small final edits

NOAA-EDAB · Mar 23, 2022 · 1907114 · 1907114
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diff --git a/chapters/forage_energy_density.Rmd b/chapters/forage_energy_density.Rmd
@@ -44,7 +44,7 @@ NA
 
 ### Data analysis
 
-Samples were analyzed for proximate composition and energy density from NEFSC spring and fall bottom trawl surveys. Predictive relationships between the percent dry weight of samples and energy density were developed, and samples collected from current surveys are currently being analyzed for percentage dry weight to enable estimation of energy content (@Bean2020). The energy density of forage species differed from prior studies in the 1980s and 1990s (@steimle1985, @lawson1998, Table \@ref(fig:tab)).
+Samples were analyzed for proximate composition and energy density from NEFSC spring and fall bottom trawl surveys. Predictive relationships between the percent dry weight of samples and energy density were developed, and samples collected from current surveys are currently being analyzed for percentage dry weight to enable estimation of energy content (@Bean2020). The energy density of forage species differed from prior studies in the 1980s and 1990s (@steimle1985, @lawson1998, Table \@ref(tab:foragefish)).
 
 Sampling and laboratory analysis is ongoing, with the goal of continuing routine monitoring of energy density of these species. 
 
@@ -54,8 +54,8 @@ Code for building the table used in the SOE can be found
 [here](https://github.com/NOAA-EDAB/ecodata/blob/master/chunk-scripts/macrofauna.Rmd-forage.R). 
 
 ### Plotting
-Code used to develop this plot can be found [here](https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/chunk-scripts/macrofauna_MAB.Rmd-energy-density.R)
+Code used to develop this plot can be found [here](https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/chunk-scripts/macrofauna_MAB.Rmd-energy-density.R).
 
-```{r tab, code = readLines("https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/chunk-scripts/macrofauna_MAB.Rmd-energy-density.R"), echo = F, eval = T, warning = F, message=F}
+```{r tab, code = readLines("https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/chunk-scripts/macrofauna_MAB.Rmd-energy-density.R"), echo = F, eval = T, warning = F, message=F, fig.cap="Forage fish mean energy density mean and standard deviation by season and year, compared with 1980s and 1990s."}
 
 ```
diff --git a/chapters/gulf_stream_index.Rmd b/chapters/gulf_stream_index.Rmd
@@ -4,8 +4,8 @@
 
 **Indicator category**: Published method
 
-**Found in**: State of the Ecosystem - New England (2019 (Different Methods), 2020, 2021), 
-State of the Ecosystem - Mid-Atlantic (2019 (Different Methods), 2020, 2021) 
+**Found in**: State of the Ecosystem - New England (2019 (Different Methods), 2020, 2021, 2022), 
+State of the Ecosystem - Mid-Atlantic (2019 (Different Methods), 2020, 2021, 2022) 
 
 **Contributor(s)**: Zhuomin Chen, Young-oh Kwon
 
@@ -35,7 +35,7 @@ The Gulf Stream index data set was formatted for inclusion in the `ecodata` R pa
 The plot below was built using the code found
 [here](https://github.com/NOAA-EDAB/ecodata/blob/master/chunk-scripts/LTL.Rmd-GSI.R). 
 
-```{r , code = readLines("https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/chunk-scripts/LTL_MAB.Rmd-gsi.R"), eval = T, echo=F, fig.cap="Gulf Stream Index" }
+```{r , code = readLines("https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/chunk-scripts/LTL_MAB.Rmd-gsi.R"), eval = T, echo=F, fig.cap="Index representing changes in the location of the Gulf Stream north wall. Positive values represent a more northerly" }
 
 ```
 

diff --git a/chapters/hms_stock_status.Rmd b/chapters/hms_stock_status.Rmd
@@ -43,11 +43,11 @@ Code for processing Atlantic HMS Stock status data can be found [here](https://g
 
 ### Plotting
 Code used to create the figure below can be [here](https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/chunk-scripts/human_dimensions_MAB.Rmd-hms-stock-status.R).
-```{r , code = readLines("https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/chunk-scripts/human_dimensions_MAB.Rmd-hms-stock-status.R")}
+```{r , code = readLines("https://raw.githubusercontent.com/NOAA-EDAB/ecodata/master/chunk-scripts/human_dimensions_MAB.Rmd-hms-stock-status.R"), fig.cap="Summary of single species status for HMS stocks; key to species names above."}
 
 ```
 
-### Resources
+### References
 NOAA. 2021. 2020 Stock Assessment and Fishery Evaluation Report: Atlantic Highly Migratory Species. Atlantic Highly Migratory Species Management Division, Silver Spring, MD. https://www.fisheries.noaa.gov/atlantic-highly-migratory-species/atlantic-highly-migratory-species-stock-assessment-and-fisheries-evaluation-reports