Merge jcb-gdas into gdasapp#2031

Closed

DavidNew-NOAA wants to merge 202 commits intodevelopfrom

feature/jcb-gdas

Commits on Feb 28, 2024

Commits on Feb 29, 2024

add some gdas yamls
danholdaway
committed

Commits on Mar 8, 2024

Commits on Mar 12, 2024

add building blocks for ensemble da
danholdaway
committed

Commits on Mar 13, 2024

Commits on Mar 14, 2024

rename to j2
danholdaway
committed
j2
danholdaway
committed

Commits on Mar 20, 2024

Commits on Mar 27, 2024

put all amsua n19 variables into chronicle
danholdaway
committed

Commits on Apr 2, 2024

Commits on Apr 5, 2024

Commits on Apr 8, 2024

add option for writing increment to cubed sphere
danholdaway
committed

Commits on Apr 9, 2024

no chronicle for letkf
danholdaway
committed

Commits on Apr 15, 2024

add avhrr satwind yamls
danholdaway
committed

Commits on Apr 24, 2024

Commits on Apr 29, 2024

Commits on May 9, 2024

Commits on May 10, 2024

Update output_ensemble_increments_cubed_sphere.yaml.j2
DavidNew-NOAA
authored

Commits on May 13, 2024

Merge pull request #3 from NOAA-EMC/feature/atmensanlfv3inc
danholdaway
authored
Added observations/atmosphere/satwnd.leogeo_multi.yaml.j2 for LEOGEO satwind QC filters

Brett Hoover
authored and
Brett Hoover
committed

Commits on May 14, 2024

Merge pull request #4 from NOAA-EMC/feature/add_leogeo_satwinds
danholdaway
authored

Commits on May 16, 2024

Create fv3jedi_land_ensrecenter.yaml.j2
CoryMartin-NOAA
committed

Commits on May 17, 2024

Commits on May 20, 2024

Overhaul satwnd observations/atmosphere/ .yaml.j2 files to update name-conventions: satwind->satwnd, qualityInformationWithoutForecast->qiWithoutForecast

Brett Hoover
authored and
Brett Hoover
committed

Commits on May 21, 2024

Merge pull request #7 from NOAA-EMC/feature/satwind_jcb_updates
danholdaway
authored

Commits on May 22, 2024

Add JCB template for snow DA recentering
CoryMartin-NOAA
authored

Commits on May 23, 2024

Commits on May 24, 2024

Commits on Jun 5, 2024

Yaml updates for use with updated GDASApp submodules (#8)

RussTreadon-NOAA
and
danholdaway
authored

Commits on Jun 14, 2024

Changes to the JCB snow ensemble recenter template (#18)
CoryMartin-NOAA
authored

Commits on Jun 18, 2024

Adjust testing for new path checker file (#16)
danholdaway
authored

Commits on Jun 20, 2024

Companion PR to NOAA-EMC/jcb/pull/7 (#15)

danholdaway
and
RussTreadon-NOAA
authored

Commits on Jul 30, 2024

Commits on Aug 6, 2024

Stage atmospheric backgrounds and UFS cubed-sphere history files (#19)
DavidNew-NOAA
authored

Commits on Aug 8, 2024

Update observation yamls for atmosphere var and local ensemble DA (#21)
RussTreadon-NOAA
authored

Commits on Aug 16, 2024

replace fixed distribution name with templated variable (#23)
RussTreadon-NOAA
authored

Commits on Aug 27, 2024

Adding AHI and SEVIRI satwnd thinning, enrolling AHI-H9, SEVIRI-M9, SEVIRI-M10 (#25)

BrettHoover-NOAA
and
Brett Hoover
authored

Commits on Sep 17, 2024

Revive the marine jcb implementation (#26)
guillaumevernieres
authored

Commits on Sep 25, 2024

Change hydrostatic_delz to delz (#27)
DavidNew-NOAA
authored

Commits on Oct 3, 2024

Updates to the marine static-b yaml (#30)
guillaumevernieres
authored

Commits on Oct 9, 2024

JCB-based obs+bias staging (#31)
DavidNew-NOAA
authored

Commits on Oct 22, 2024

Add support for global aerosol DA in JCB (#33)
CoryMartin-NOAA
authored

Commits on Oct 23, 2024

Commits on Oct 30, 2024

Commits on Nov 1, 2024

Create JCB templates for marine B-matrix (#36)

authored

Commits on Nov 6, 2024

Add YAML configuration files for SEVIRI M08 and M11 with Thinning and Quality Control (#40)

authored

Commits on Nov 8, 2024

Add more CI to GW-CI (#42)
DavidNew-NOAA
authored

Commits on Nov 12, 2024

Update to jcb-gdas marine obs yamls (#41)

JohnSteffen-NOAA
and
guillaumevernieres
authored

Commits on Nov 14, 2024

Make do_testing an optional parameter (#44)
DavidNew-NOAA
authored

Commits on Nov 15, 2024

Update variables to be consistent with updated jedi hashes (#45)
RussTreadon-NOAA
authored

Commits on Nov 21, 2024

Add soca->cice global file (#47)
shlyaeva
authored

Commits on Nov 26, 2024

more changes for switching aerosol DA to JCB (#48)
CoryMartin-NOAA
authored

Commits on Dec 2, 2024

Bug fixes and changes necessary to run the Ens. var (#46)
guillaumevernieres
authored

Commits on Dec 12, 2024

Changes to get snow 2DVar for deterministic and ensemble mean working (#52)

authored

Commits on Dec 13, 2024

Commits on Dec 16, 2024

Updated configuration for "cp4" (#58)

guillaumevernieres
and
JohnSteffen-NOAA
authored

Commits on Dec 18, 2024

Turn shuffle option on in soca -> cice. (#60)

shlyaeva
and
Anna Shlyaeva
authored

Commits on Dec 20, 2024

update soil variables to be consistent with fv3-jedi changes (#56)
RussTreadon-NOAA
authored

Commits on Dec 31, 2024

Add diagnostic flags to the snow DA jcb yamls (#62)
jiaruidong2017
authored

Commits on Jan 3, 2025

Update YAMLs for aerosol VarBC (#61)

authored

Commits on Jan 16, 2025

Add precipitable clouds in microwave all-sky assimilations (#63)
jianjunj
authored

Commits on Jan 18, 2025

Revert " Add precipitable clouds in microwave all-sky assimilations" (#68)
RussTreadon-NOAA
authored

Commits on Jan 22, 2025

Add option for outputting post-processed soca ice increment (#64)

authored

Commits on Jan 23, 2025

Add GNSSRO yaml files (#67)

XuanliLi-NOAA
and
danholdaway
authored

Commits on Jan 24, 2025

Commits on Jan 28, 2025

change aerosol gaussian increment from ges res to anl res (#71)
CoryMartin-NOAA
authored

Commits on Feb 3, 2025

Configuration for the low res marine B (#66)

guillaumevernieres
and
danholdaway
authored

Commits on Feb 10, 2025

Update stat anlaysis job templates and add snow template (#70)

kevindougherty-noaa
and
danholdaway
authored

Commits on Feb 21, 2025

Remove the ens B from the marine hybrid B (#73)
guillaumevernieres
authored

Commits on Feb 25, 2025

Quick Filename Fix for Stats YAMLs (#80)
kevindougherty-noaa
authored

Commits on Feb 26, 2025

Commits on Feb 27, 2025

Add separate salt and temp configs for argo (#78)
AndrewEichmann-NOAA
authored

Commits on Mar 5, 2025

Set up the reject list in observation chronicle for GTS synoptic snow depth data (#79)
jiaruidong2017
authored

Commits on Mar 6, 2025

Add aerosol bias correction to yaml templates (#83)

ypwang19
and
ypwang19
authored

Commits on Mar 10, 2025

Commits on Mar 14, 2025

Add sample conventional surface pressure template for generating summary stats (#85)
CoryMartin-NOAA
authored

Commits on Mar 28, 2025

group snow obs by stationID (#91)
CoryMartin-NOAA
authored

Commits on Mar 31, 2025

add state variables to inverse block to gsibec templates (#93)
RussTreadon-NOAA
authored

Commits on Apr 1, 2025

Commits on Apr 2, 2025

Commits on Apr 7, 2025

Commits on Apr 11, 2025

Temporarily reverted cloud_fraction=1.0. (#104)
jianjunj
authored

Commits on Apr 15, 2025

Bugfix for marine qc filters (#105)
JohnSteffen-NOAA
authored

Commits on Apr 22, 2025

updates to allow atmospheric DA with all-sky microwave assimilation (#109)
RussTreadon-NOAA
authored

Commits on Apr 25, 2025

Add initial configures enable for cycle dependent reject lists (#86)
jiaruidong2017
authored

Commits on May 5, 2025

Commits on May 7, 2025

Commits on May 8, 2025

Update ims_snow_template.yaml.j2 (#120)
CoryMartin-NOAA
authored

Commits on May 9, 2025

Fix aero ioda-stats YAMLs (#121)
CoryMartin-NOAA
authored

Commits on May 15, 2025

JCB templates for marine analysis refactor (#114)
DavidNew-NOAA
authored

Commits on May 19, 2025

Revise IMS ioda-stats YAML and add other snow stats YAMLs (#123)
yuanxue2870
authored

Commits on May 20, 2025

rename "snocvr_snow" to "snocvr" (#125)
yuanxue2870
authored

Commits on May 22, 2025

Marine refactor revisions (#126)
DavidNew-NOAA
authored

Commits on May 27, 2025

Refactor the FieldMetadata and disable variable name aliasing (#98)
RussTreadon-NOAA
authored

Commits on May 28, 2025

Commits on Jun 2, 2025

Commits on Jun 9, 2025

Bugfix for marine obs over model's land (#136)

shlyaeva
and
Anna Shlyaeva
authored

Commits on Jun 11, 2025

New config for stability check (#134)
guillaumevernieres
authored

Commits on Jun 12, 2025

Combine soca increment postprocessing in one step (#135)

shlyaeva
and
Anna Shlyaeva
authored
add max allowable geometry difference to atmospheric templates (#138)

RussTreadon-NOAA
and
danholdaway
authored

Commits on Jun 13, 2025

Save soca_diag_stats yaml with JCB (#141)
DavidNew-NOAA
authored

Commits on Jun 18, 2025

Marine configurations for cp4.02c-parallel experiments (#140)

authored

Commits on Jun 19, 2025

add Deterministic to local ensemble DA solver name (#143)
RussTreadon-NOAA
authored

Commits on Jun 25, 2025

Add aircraft yaml j2. (#103)

authored

Commits on Jun 30, 2025

Add yaml section for truncating increments to a certain precision (#145)

shlyaeva
and
Anna Shlyaeva
authored

Commits on Jul 8, 2025

Replace slmsk with fraction_of_land (#146)

yuanxue2870
and
jiaruidong2017
authored

Commits on Jul 15, 2025

Add QC yamls for separate ADT retrievals (#151)
JohnSteffen-NOAA
authored

Commits on Jul 22, 2025

Companion for GW refactoring of marine ensemble recentering (#152)
DavidNew-NOAA
authored

Commits on Jul 25, 2025

Add thinning for ice obs when used in LETKF (#153)

shlyaeva
and
Anna Shlyaeva
authored

Commits on Jul 28, 2025

Remove buddy check filter and remove threshold option from background check filter for snow DA (#150)

authored

Commits on Aug 4, 2025

Updates for faster recentering (#154)

shlyaeva
and
Anna Shlyaeva
authored

Commits on Aug 11, 2025

Switch to using YAML based rescaling for aerosol B matrix (#159)
CoryMartin-NOAA
authored

Commits on Aug 20, 2025

Added configurations for AMSR2_GCOM-W1 (#133)

jianjunj
and
CoryMartin-NOAA
authored

Commits on Aug 25, 2025

Activated the Thompson method calculate cloud fraction and particle radii (#118)

authored

Commits on Aug 27, 2025

Configuration changes for parallel marine ensemble recenter (#160)

shlyaeva
and
Anna Shlyaeva
authored

Commits on Sep 2, 2025

Commits on Sep 8, 2025

Commits on Sep 11, 2025

Commits on Sep 15, 2025

Commits on Sep 18, 2025

update surface pressure correction scheme keywords (#178)
RussTreadon-NOAA
authored

Commits on Sep 19, 2025

Make the MPI layout for the IMS preprocessor variable (#179)
CoryMartin-NOAA
authored

Commits on Sep 23, 2025

Update jcb-gdas observation yamls (#180)

andytangborn
and
CoryMartin-NOAA
authored

Commits on Sep 24, 2025

Skip copy if aero obs file is missing (#181)

ypwang19
and
ypwang19
authored

Commits on Sep 29, 2025

Clean-up of the ice concentration obs yamls (#182)
guillaumevernieres
authored

Commits on Sep 30, 2025

Addition of the "missing file action" yaml key to the marine obs yamls (#185)
guillaumevernieres
authored

Commits on Oct 2, 2025

separate ens vs parametric bkgerr stats (#186)
AndrewEichmann-NOAA
authored

Commits on Oct 6, 2025

Add observation YAML and chronicle files for new snow observations (#188)
jiaruidong2017
authored

Commits on Oct 10, 2025

Add the "cycle date" key to the stats yaml (#187)
guillaumevernieres
authored

Commits on Oct 15, 2025

Update comment from 'cloudFree' to 'Data Thinning' (#193)
emilyhcliu
authored

Commits on Oct 16, 2025

GSI surface pressure stats template (#191)
CoryMartin-NOAA
authored

Commits on Oct 21, 2025

Use station pressure from 3 sources (#190)
CoryMartin-NOAA
authored

Commits on Oct 22, 2025

JCB companion to Global Workflow marine refactoring (#194)
DavidNew-NOAA
authored

Commits on Oct 23, 2025

Bring back conventional_ps (#195)
CoryMartin-NOAA
authored

Commits on Oct 24, 2025

Modify the maximum value of station elevation to 3000 m (#196)
jiaruidong2017
authored

Commits on Oct 28, 2025

Commits on Oct 31, 2025

Commits on Nov 3, 2025

Update the commissioning time for new snow observations (#204)
jiaruidong2017
authored

Commits on Nov 7, 2025

Remove old obs staging templates (#206)
DavidNew-NOAA
authored

Commits on Nov 12, 2025

Use ObsForge for AOD (#205)
CoryMartin-NOAA
authored

Commits on Nov 13, 2025

Put quotes around datetimes (#209)
DavidNew-NOAA
authored

Commits on Nov 24, 2025

Extend templates to run atmospheric JEDI EnVar DA with GSI EnKF (#208)
RussTreadon-NOAA
authored

Commits on Dec 2, 2025

Corrects sea salt bin mapping between forward operator and model (#211)

ypwang19
and
ypwang19
authored

Commits on Dec 11, 2025

Add select hydrometeors to atmospheric DA yamls (#216)
RussTreadon-NOAA
authored

Commits on Dec 18, 2025

Add smap soil moisture config files (#218)

tsga
and
jiaruidong2017
authored

Commits on Dec 19, 2025

JCB-GDAS companion to GW obs staging and analysis stats refactor (#214)
DavidNew-NOAA
authored

Commits on Jan 7, 2026

Revert some changes
DavidNew-NOAA
committed