Rtofs ufs cycle updates

[zgarraffo]

updates for operational setup creation of the MOM incremental update files.
Verified that it runs by launching /lfs/h2/emc/couple/save/zulema.garraffo/rtofs.v3.0.0/ncoda_rtofs_glo.launch.V3.sh

[zgarraffo]

in build_rtofs.sh, to include compilation of hycom_tools_for_mom6.fd,
after
cd ./rtofs_code.fd;./build_code.sh;cd ..
include:

echo
echo Building hycom_tools_for_mom6.fd
echo
cd ./hycom_tools_for_mom6.fd;./build_all.sh;cd ..

[sanAkel]

Seems this cp of executables is then being overwritten by a mv.

[zgarraffo]

It needs to be copied to the systems exec
My build_all.sh has

move executables

for f in ls -1 *.x; do
cp $f ../../exec/rtofs_$f
done
mkdir -p ${BASE}/exec
mv *.x ${BASE}/exec

[sanAkel]

It needs to be copied to the systems exec

My build_all.sh has

move executables

for f in ls -1 *.x; do

cp $f ../../exec/rtofs_$f

done

Ask yourself what does the ⬆️ do?

mkdir -p ${BASE}/exec

mv *.x ${BASE}/exec

Then ask the same question!

[zgarraffo]

The script
https://github.com/NOAA-EMC/RTOFS_GLO/blob/develop/scripts/exrtofs_glo_ncoda_inc.sh
calls the executable with a name consistent with all the other executables
$EXECrtofs/rtofs_ncodaz_inc2mom6nc_glb_lyr.x < ncoda_inc2mom6nc_lyr.input >> $pgmout
Without copying to $EXECrtofs it doesn't run. It is also copied with a name as the other executables, rtofs_ncodaz... instead of ncodaz...
cp may be replaced by mv, and the exec directory sorc/hycom_tools_for_mom6.fd/exec eliminated. I left it temporarily but should be eliminated. So replace moving to
$projectroot/sorc/hycom_tools_for_mom6.fd/exec
by moving to
$projectroot/exec with name rtofs_ncodaz... If there will always be a single executable no need of loop, but loop is needed to add rtofs_ at the beginning of the executable.

[sanAkel]

The script https://github.com/NOAA-EMC/RTOFS_GLO/blob/develop/scripts/exrtofs_glo_ncoda_inc.sh calls the executable with a name consistent with all the other executables $EXECrtofs/rtofs_ncodaz_inc2mom6nc_glb_lyr.x < ncoda_inc2mom6nc_lyr.input >> $pgmout Without copying to $EXECrtofs it doesn't run. It is also copied with a name as the other executables, rtofs_ncodaz... instead of ncodaz... cp may be replaced by mv, and the exec directory sorc/hycom_tools_for_mom6.fd/exec eliminated. I left it temporarily but should be eliminated. So replace moving to $projectroot/sorc/hycom_tools_for_mom6.fd/exec by moving to $projectroot/exec with name rtofs_ncodaz... If there will always be a single executable no need of loop, but loop is needed to add rtofs_ at the beginning of the executable.

@zgarraffo In the z levels that you have NCODA did you include the SSH or not?

[zgarraffo]

The program ncodaz* reads the input layer thickness from the ncoda restart file, where the thicknesses add to depth and not to depth+ssh. (The program ncodaz_*lyr.x doesn't read anything in z but all files in layers)

[sanAkel]

The program ncodaz* reads the input layer thickness from the ncoda restart file, where the thicknesses add to depth and not to depth+ssh. (The program ncodaz_*lyr.x doesn't read anything in z but all files in layers)

Thanks for the ⬆️ information.

[zgarraffo]

Your script for creation of the ice file sic.nc has to be added to https://github.com/NOAA-EMC/RTOFS_GLO/blob/develop/scripts/exrtofs_glo_ncoda_inc.sh (or somewhere else)

[sanAkel]

Your script for creation of the ice file sic.nc has to be added to https://github.com/NOAA-EMC/RTOFS_GLO/blob/develop/scripts/exrtofs_glo_ncoda_inc.sh (or somewhere else)

I'm aware of that