Replace Links with cpfs/cpreq in Workflow Scripts

dev/scripts/exgdas_enkf_post.sh

@@ -66,6 +66,7 @@ for imem in $(seq 1 "${NMEM_ENS}"); do
     MEMDIR=${memchar} YMD=${PDY} HH=${cyc} declare_from_tmpl -x \
         COMIN_ATMOS_HISTORY:COM_ATMOS_HISTORY_TMPL
 
+    # TODO: remove deadlinks and refer https://github.com/NOAA-EMC/global-workflow/issues/4405
     for fhr in $(seq "${FHMIN}" "${FHOUT}" "${FHMAX}"); do
         fhrchar=$(printf %03i "${fhr}")
         ${NLN} "${COMIN_ATMOS_HISTORY}/${PREFIX}sfc.f${fhrchar}.nc" "sfcf${fhrchar}_${memchar}"
@@ -82,6 +83,7 @@ fi
 
 for fhr in $(seq "${FHMIN}" "${FHOUT}" "${FHMAX}"); do
     fhrchar=$(printf %03i "${fhr}")
+    # TODO: remove deadlinks and refer https://github.com/NOAA-EMC/global-workflow/issues/4405
     ${NLN} "${COMOUT_ATMOS_HISTORY_STAT}/${PREFIX}ensmean.sfc.f${fhrchar}.nc" "sfcf${fhrchar}.ensmean"
     ${NLN} "${COMOUT_ATMOS_HISTORY_STAT}/${PREFIX}ensmean.atm.f${fhrchar}.nc" "atmf${fhrchar}.ensmean"
     if [[ "${SMOOTH_ENKF}" == "YES" ]]; then

dev/scripts/exgfs_wave_post_pnt.sh

@@ -137,7 +137,7 @@ while [[ ${fhr} -le ${FHMAX_WAV_PNT} ]]; do
     FH3=$(printf %03i "${fhr}")
     pfile="${COMIN_WAVE_HISTORY}/${WAV_MOD_TAG}.points.f${FH3}.nc"
     if [[ -f "${pfile}" ]]; then
-        ${NLN} "${pfile}" "./${ymdhms}.out_pnt.ww3.nc"
+        cpreq "${pfile}" "./${ymdhms}.out_pnt.ww3.nc"
     else
         export err=7
         err_exit "NO RAW POINT OUTPUT FILE ${ymdhms}.out_pnt.ww3.nc"

dev/scripts/exgfs_wave_prdgen_gridded.sh

@@ -110,7 +110,7 @@ while [[ "${fhcnt}" -le "${FHMAX_WAV}" ]]; do
         #======================================================================
         GRIBIN="${RUN}.${cycle}.${grdID}.f${fhr}.clipped.grib2"
 
-        ${NLN} "${GRIBIN}" "gribfile.${grdID}.f${fhr}"
+        cpreq "${GRIBIN}" "gribfile.${grdID}.f${fhr}"
 
         # 1.d Input template files
         parmfile="${PARMgfs}/wave/grib2_${RUN}wave.${grdOut}.f${fhr}"

dev/scripts/exglobal_enkf_ecen.sh

@@ -112,6 +112,7 @@ for FHR in $(seq "${FHMIN}" "${FHOUT}" "${FHMAX}"); do
         MEMDIR=${gmemchar} RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -x \
             COMIN_ATMOS_HISTORY_MEM_PREV:COM_ATMOS_HISTORY_TMPL
 
+        # TODO: remove deadlinks and refer https://github.com/NOAA-EMC/global-workflow/issues/4405
         ${NLN} "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX_ENS}atm.f00${FHR}${ENKF_SUFFIX}.nc" "./atmges_${memchar}"
         if [[ "${DO_CALC_INCREMENT}" == "YES" ]]; then
             ${NLN} "${COMOUT_ATMOS_ANALYSIS_MEM}/${APREFIX_ENS}analysis.atm.a00${FHR}.nc" "./atmanl_${memchar}"
@@ -168,7 +169,7 @@ for FHR in $(seq "${FHMIN}" "${FHOUT}" "${FHMAX}"); do
 
         # If available, link to ensemble mean guess.  Otherwise, compute ensemble mean guess
         if [[ -s "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX_ENS}ensmean.atm.f00${FHR}.nc" ]]; then
-            ${NLN} "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX_ENS}ensmean.atm.f00${FHR}.nc" "./atmges_ensmean"
+            cpreq "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX_ENS}ensmean.atm.f00${FHR}.nc" "./atmges_ensmean"
         else
             DATAPATH="./"
             ATMGESNAME="atmges"
@@ -214,10 +215,10 @@ for FHR in $(seq "${FHMIN}" "${FHOUT}" "${FHMAX}"); do
 
         # if we already have a ensemble resolution GSI analysis then just link to it
         if [[ -f ${ATMANL_GSI_ENSRES} ]]; then
-            ${NLN} "${ATMANL_GSI_ENSRES}" atmanl_gsi_ensres
+            cpreq "${ATMANL_GSI_ENSRES}" atmanl_gsi_ensres
         else
-            ${NLN} "${ATMANL_GSI}" atmanl_gsi
-            ${NLN} "${ATMANL_GSI_ENSRES}" atmanl_gsi_ensres
+            cpreq "${ATMANL_GSI}" atmanl_gsi
+            cpreq "${ATMANL_GSI_ENSRES}" atmanl_gsi_ensres
             SIGLEVEL="${SIGLEVEL:-"${FIXgfs}/am/global_hyblev.l${LEVS}.txt"}"
             ${NLN} "${CHGRESNC}" chgres.x
             chgresnml=chgres_nc_gauss.nml

dev/scripts/exglobal_enkf_update.sh

@@ -140,14 +140,14 @@ for imem in $(seq 1 "${NMEM_ENS}"); do
     mkdir -p "${COMOUT_ATMOS_ANALYSIS_MEM}"
 
     for FHR in ${nfhrs}; do
-        ${NLN} "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}atm.f00${FHR}${ENKF_SUFFIX}.nc" \
+        cpreq "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}atm.f00${FHR}${ENKF_SUFFIX}.nc" \
             "sfg_${PDY}${cyc}_fhr0${FHR}_${memchar}"
         if [[ "${hofx_2m_sfcfile}" == ".true." ]]; then
-            ${NLN} "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfc.f00${FHR}${ENKF_SUFFIX}.nc" \
+            cpreq "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfc.f00${FHR}${ENKF_SUFFIX}.nc" \
                 "bfg_${PDY}${cyc}_fhr0${FHR}_${memchar}"
         fi
         if [[ "${cnvw_option}" == ".true." ]]; then
-            ${NLN} "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfc.f00${FHR}.nc" \
+            cpreq "${COMIN_ATMOS_HISTORY_MEM_PREV}/${GPREFIX}sfc.f00${FHR}.nc" \
                 "sfgsfc_${PDY}${cyc}_fhr0${FHR}_${memchar}"
         fi
 
@@ -168,15 +168,16 @@ done
 
 # Ensemble mean guess
 for FHR in ${nfhrs}; do
-    ${NLN} "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}ensmean.atm.f00${FHR}.nc" \
+    cpreq "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}ensmean.atm.f00${FHR}.nc" \
         "sfg_${PDY}${cyc}_fhr0${FHR}_ensmean"
     if [[ "${cnvw_option}" == ".true." ]]; then
-        ${NLN} "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}ensmean.sfc.f00${FHR}.nc" \
+        cpreq "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}ensmean.sfc.f00${FHR}.nc" \
             "sfgsfc_${PDY}${cyc}_fhr0${FHR}_ensmean"
     fi
     if [[ "${DO_GSISOILDA}" == "YES" ]]; then
-        ${NLN} "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}ensmean.sfc.f00${FHR}.nc" \
+        cpreq "${COMIN_ATMOS_HISTORY_STAT_PREV}/${GPREFIX}ensmean.sfc.f00${FHR}.nc" \
             "bfg_${PDY}${cyc}_fhr0${FHR}_ensmean"
+        # TODO: remove deadlinks and refer https://github.com/NOAA-EMC/global-workflow/issues/4405
         ${NLN} "${COMIN_ATMOS_ANALYSIS_STAT}/${APREFIX}ensmean_increment.sfc.i00${FHR}.nc" \
             "sfcincr_${PDY}${cyc}_fhr0${FHR}_ensmean"
     fi

gempak/ush/gdas_ecmwf_meta_ver.sh

@@ -20,7 +20,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 
 export COMIN="gdas.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 vergrid="F-GDAS | ${PDY:2}/0600"
 fcsthr="0600f006"
@@ -45,6 +45,7 @@ for area in ${areas}; do
         sdatenum=$(date --utc +%y%m%d -d "${PDY} ${cyc2} - ${fhr} hours")
 
         if [[ ! -L "ecmwf.20${sdatenum}" ]]; then
+        # TODO: remove live links and refer https://github.com/NOAA-EMC/global-workflow/issues/4406
             ${NLN} "${COMINecmwf}/ecmwf.20${sdatenum}/gempak" "ecmwf.20${sdatenum}"
         fi
         gdfile="ecmwf.20${sdatenum}/ecmwf_glob_20${sdatenum}12"

gempak/ush/gdas_meta_loop.sh

@@ -13,7 +13,7 @@ device="nc | gdasloop.meta"
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L "${COMIN}" ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 if [[ "${envir}" == "para" ]]; then
@@ -42,7 +42,7 @@ for ((fhr = 24; fhr <= 144; fhr += 24)); do
         YMD=${day} HH=${cyc} GRID=1p00 declare_from_tmpl "COMIN_ATMOS_GEMPAK_1p00_past:COM_ATMOS_GEMPAK_TMPL"
         export COMIN="${RUN}.${day}${cycle}"
         if [[ ! -L "${COMIN}" ]]; then
-            ${NLN} "${COMIN_ATMOS_GEMPAK_1p00_past}" "${COMIN}"
+            cpreq -R "${COMIN_ATMOS_GEMPAK_1p00_past}" "${COMIN}"
         fi
         gdfile="${COMIN}/gdas_1p00_${day}${cycle}f000"
 

gempak/ush/gdas_meta_na.sh

@@ -13,7 +13,7 @@ device="nc | gdas.meta"
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L "${COMIN}" ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 if [[ "${envir}" == "para" ]]; then

gempak/ush/gdas_ukmet_meta_ver.sh

@@ -24,7 +24,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 # SET CURRENT CYCLE AS THE VERIFICATION GRIDDED FILE.
 export COMIN="gdas.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 vergrid="F-GDAS | ${PDY:2}/0600"
 fcsthr="0600f006"
@@ -55,6 +55,7 @@ for area in ${areas}; do
         cyclenum=${stime:6}
 
         if [[ ! -L "ukmet.20${sdatenum}" ]]; then
+        # TODO: remove live links and refer https://github.com/NOAA-EMC/global-workflow/issues/4406
             ${NLN} "${COMINukmet}/ukmet.20${sdatenum}/gempak" "ukmet.20${sdatenum}"
         fi
         gdfile="ukmet.20${sdatenum}/ukmet_20${sdatenum}${cyclenum}${dgdattim}"

gempak/ush/gfs_meta_ak.sh

@@ -20,7 +20,7 @@ device="nc | gfs.meta.ak"
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 fend=F216

gempak/ush/gfs_meta_bwx.sh

@@ -21,7 +21,7 @@ device="nc | ${metaname}"
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 fend=F180

gempak/ush/gfs_meta_comp.sh

@@ -22,12 +22,12 @@ metatype="comp"
 metaname="${mdl}_${metatype}_${cyc}.meta"
 device="nc | ${metaname}"
 
-export COMIN="gfs.multi"
-mkdir "${COMIN}"
+export COMOUT="gfs.multi"
+mkdir "${COMOUT}"
 for cycle in $(seq -f "%02g" -s ' ' 0 "${INTERVAL_GFS}" "${cyc}"); do
     YMD=${PDY} HH=${cycle} GRID="1p00" declare_from_tmpl gempak_dir:COM_ATMOS_GEMPAK_TMPL
     for file_in in "${gempak_dir}/gfs_1p00_${PDY}${cycle}f"*; do
-        file_out="${COMIN}/$(basename "${file_in}")"
+        file_out="${COMOUT}/$(basename "${file_in}")"
         if [[ ! -L "${file_out}" ]]; then
             ${NLN} "${file_in}" "${file_out}"
         fi
@@ -36,6 +36,7 @@ done
 
 export HPCNAM="nam.${PDY}"
 if [[ ! -L ${HPCNAM} ]]; then
+# TODO: remove live links and refer https://github.com/NOAA-EMC/global-workflow/issues/4406
     ${NLN} "${COMINnam}/nam.${PDY}/gempak" "${HPCNAM}"
 fi
 
@@ -101,7 +102,7 @@ for gareas in US NP; do
         HPCGFS="${RUN}.${init_time}"
         if [[ ! -L ${HPCGFS} ]]; then
             YMD="${init_PDY}" HH="${init_cyc}" GRID="1p00" declare_from_tmpl source_dir:COM_ATMOS_GEMPAK_TMPL
-            ${NLN} "${source_dir}" "${HPCGFS}"
+            cpreq -R "${source_dir}" "${HPCGFS}"
         fi
 
         if [[ ${init_PDY} == "${PDY}" ]]; then

gempak/ush/gfs_meta_crb.sh

@@ -23,7 +23,7 @@ device="nc | ${metaname}"
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 # DEFINE YESTERDAY
@@ -255,6 +255,7 @@ if [[ ${cyc} == 00 ]]; then
     HPCECMWF_m1=ecmwf.${PDY}
     export HPCUKMET=ukmet.${PDYm1}
     if [[ ! -L "${HPCECMWF}" ]]; then
+    # TODO: remove live links and refer https://github.com/NOAA-EMC/global-workflow/issues/4406
         ${NLN} "${COMINecmwf}/ecmwf.${PDY}/gempak" "${HPCECMWF}"
     fi
     if [[ ! -L "${HPCECMWF_m1}" ]]; then

gempak/ush/gfs_meta_hi.sh

@@ -17,7 +17,7 @@ device="nc | mrfhi.meta"
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 if [[ "${envir}" = "prod" ]]; then

gempak/ush/gfs_meta_hur.sh

@@ -23,7 +23,7 @@ device="nc | ${metaname}"
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 #
@@ -309,6 +309,7 @@ if [[ ${cyc} -eq 00 ]]; then
     HPCECMWF_m1=ecmwf.${PDY}
     export HPCUKMET=ukmet.${PDYm1}
     if [[ ! -L "${HPCECMWF}" ]]; then
+    # TODO: remove live links and refer https://github.com/NOAA-EMC/global-workflow/issues/4406
         ${NLN} "${COMINecmwf}/ecmwf.${PDY}/gempak" "${HPCECMWF}"
     fi
     if [[ ! -L "${HPCECMWF_m1}" ]]; then

gempak/ush/gfs_meta_mar_atl.sh

@@ -17,7 +17,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 mdl=gfs

gempak/ush/gfs_meta_mar_comp.sh

@@ -20,7 +20,7 @@ for cycle in $(seq -f "%02g" -s ' ' 0 "${INTERVAL_GFS}" "${cyc}"); do
     for file_in in "${gempak_dir}/gfs_1p00_${PDY}${cycle}f"*; do
         file_out="${COMIN}/$(basename "${file_in}")"
         if [[ ! -L "${file_out}" ]]; then
-            ${NLN} "${file_in}" "${file_out}"
+            cpreq "${file_in}" "${file_out}"
         fi
     done
 done
@@ -31,6 +31,7 @@ done
 #
 export HPCNAM="nam.${PDY}"
 if [[ ! -L ${HPCNAM} ]]; then
+# TODO: remove live links and refer https://github.com/NOAA-EMC/global-workflow/issues/4406
     ${NLN} "${COMINnam}/nam.${PDY}/gempak" "${HPCNAM}"
 fi
 
@@ -78,7 +79,7 @@ for garea in NAtl NPac; do
         HPCGFS="${RUN}.${init_time}"
         if [[ ! -L ${HPCGFS} ]]; then
             YMD="${init_PDY}" HH="${init_cyc}" GRID="1p00" declare_from_tmpl source_dir:COM_ATMOS_GEMPAK_TMPL
-            ${NLN} "${source_dir}" "${HPCGFS}"
+            cpreq -R "${source_dir}" "${HPCGFS}"
         fi
 
         case ${cyc} in
@@ -226,6 +227,7 @@ EOF
 
         export HPCUKMET="ukmet.${ukmet_PDY}"
         if [[ ! -L "${HPCUKMET}" ]]; then
+        # TODO: remove live links and refer https://github.com/NOAA-EMC/global-workflow/issues/4406
             ${NLN} "${COMINukmet}/ukmet.${ukmet_PDY}/gempak" "${HPCUKMET}"
         fi
         grid2="F-UKMETHPC | ${ukmet_PDY:2}/${ukmet_date}"
@@ -315,6 +317,7 @@ EOF
 
         HPCECMWF=ecmwf.${PDY}
         if [[ ! -L "${HPCECMWF}" ]]; then
+        # TODO: remove live links and refer https://github.com/NOAA-EMC/global-workflow/issues/4406
             ${NLN} "${COMINecmwf}/ecmwf.${ecmwf_PDY}/gempak" "${HPCECMWF}"
         fi
         grid2="${HPCECMWF}/ecmwf_glob_${ecmwf_date}"

gempak/ush/gfs_meta_mar_pac.sh

@@ -17,7 +17,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 mdl=gfs

gempak/ush/gfs_meta_mar_ql.sh

@@ -17,7 +17,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 mdl=gfs

gempak/ush/gfs_meta_mar_skewt.sh

@@ -17,7 +17,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 mdl=gfs

gempak/ush/gfs_meta_mar_ver.sh

@@ -17,7 +17,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 mdl=gfs

gempak/ush/gfs_meta_nhsh.sh

@@ -15,7 +15,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 if [[ "${envir}" == "para" ]]; then

gempak/ush/gfs_meta_opc_na_ver.sh

@@ -17,7 +17,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 mdl=gfs
@@ -64,7 +64,7 @@ for lookback in "${lookbacks[@]}"; do
     HPCGFS="${RUN}.${init_time}"
     if [[ ! -L ${HPCGFS} ]]; then
         YMD=${init_PDY} HH=${init_cyc} GRID="1p00" declare_from_tmpl source_dir:COM_ATMOS_GEMPAK_TMPL
-        ${NLN} "${source_dir}" "${HPCGFS}"
+        cpreq -R "${source_dir}" "${HPCGFS}"
     fi
 
     grid="F-${MDL2} | ${init_PDY}/${init_cyc}00"

gempak/ush/gfs_meta_opc_np_ver.sh

@@ -17,7 +17,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 mdl=gfs
@@ -64,7 +64,7 @@ for lookback in "${lookbacks[@]}"; do
     HPCGFS="${RUN}.${init_time}"
     if [[ ! -L "${HPCGFS}" ]]; then
         YMD=${init_PDY} HH=${init_cyc} GRID="1p00" declare_from_tmpl source_dir:COM_ATMOS_GEMPAK_TMPL
-        ${NLN} "${source_dir}" "${HPCGFS}"
+        cpreq -R "${source_dir}" "${HPCGFS}"
     fi
 
     grid="F-${MDL2} | ${init_PDY}/${init_cyc}00"

gempak/ush/gfs_meta_precip.sh

@@ -17,7 +17,7 @@ cpreq "${HOMEgfs}/gempak/fix/datatype.tbl" datatype.tbl
 #
 export COMIN="${RUN}.${PDY}${cyc}"
 if [[ ! -L ${COMIN} ]]; then
-    ${NLN} "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
+    cpreq -R "${COMIN_ATMOS_GEMPAK_1p00}" "${COMIN}"
 fi
 
 #