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Reworked cs_runner + added FEMA 100 + bathymetry #132

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anguswg-ucsb
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Updated the cs_runner/ directory to include:

  • download_fema100.R for downloading FEMA 100 year floodplain files
  • partition_fema_by_vpu.R for getting FEMA polygons for each VPU for later use with extending transects
  • Updated 01_transects.R to use FEMA 100 year polygons to improve transects length estimation
  • Added 03_inject_ml.R for updating cross section points with modelled widths/depth values and AHGEstimation bathymetry
  • Updated the 04_driver.R script to run the new FEMA getting/processing scripts

…D features, added waterbody reference feature download and waterbody intersection removal to 02_cs_pts.R runner
…le in which remote datasets theypoint too, updating transects runner to use powerlaw bankful width and updated cs_pts runner to remove waterbodies and try and extend transects with flat cross section Z values
…pdated and save a new updated local version of transects after cross section rectification, added a COLLECT_META flag for if meta data CSVs for each cross section run should be collected and saved locally
… section points, also added a COLLECT_META and META_PATH in config_vars.R that if selected will save out changes made during cs pt rectification
…ds in hydrofabric3D transect and cross section point generation
…shaper CLI, currently in the download_fema.R script but going to move it to its own script
… and simplifies, and cleans FGBs and outputs cleaned GPKGs for use with nextgen flowlines and transect generation
…and began checking for min extension distances, WIP, needs cleanups
… whether left, right, or both ends need to be extended from
… cs_runners/, split download_nextgen.R into seperate scripts for downloading nextgen, ref_features, and ML outputs, moved util functions to a utils.R script, updated 04_driver.R script, still more cleanups needed
…nformed, set of transect lines and cross section points given a CONUS network and an AOI for subsetting that network
…eplacing DEM points with diffusive DEM points where needed
…leanliness, going to delete old folder eventually when done moving stuff over/making changes
…il function helpers for managing filepaths/names
@mikejohnson51
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@anguswg-ucsb closing this ATM, please makes sure this work makes to hydrofabricRunners!

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