Code

Netcdf output#744

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donaldwj wants to merge 37 commits intoNOAA-OWP:masterNOAA-OWP/ngen:masterfrom

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Commits

Commits on Apr 8, 2024

• Add missing files

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  ce2adad

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• Create NetCDF from a list of dimensions and variables.

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• Add comments and netcdf write test.

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• Rename variable 'tree' to 'config_ptree' in FormulationManager for clarity.

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• Inital parsing code for listed netcdf variable and dimensions.

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• Updates to integration code.

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• Bug fixes from debuggin unit tests.

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• Added example config file for nc output.

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• fixes to sample data fire.

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• Requested output file structure is now saved in the ConfigurationManager.

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Commits on Apr 10, 2024

• Fixing rebase porblems and broken netcdf output unit test.

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• Document requirments.txt fire in README.

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• Updating CMakeList for easier configuration.

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• Removing unnessessary namespace qualifiers.

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• Add missing #define.

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Commits on Apr 11, 2024

• Adding feature guards for netcdf output code in FormulationManager.

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• Provide default values of mpi_rank to test that use FormulationManager.

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Commits on Apr 17, 2024

• Add class_id() to layers.

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• Start adding member functions to Forumulation for BMI queries

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• Remove attempt to force non copy of return vector with move.

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Commits on Apr 18, 2024

• Correcting typo in description of requirements.txt

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• Added output interface to allow access to required BMI information for netcdf output.

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Commits on Apr 24, 2024

• Add inital interface for retireving bmi values for

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Commits on Apr 25, 2024

• Basic definition of output interface for bmi_multi.

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Commits on May 1, 2024

• Added config based translation of BMI variable names.

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Commits on May 30, 2024

• Add logic for creation of netcdf file from layer

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Commits on Jun 3, 2024

• Updating renamed files

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Commits on Jun 6, 2024

• Create base class for output writers, this allows update_models() to keep one signature.

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Commits on Aug 14, 2024

• Update to main loop added outline of data export with BMI.

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• formating fix

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Commits on Aug 21, 2024

• Proto type code for building netcdf output arrays added to layers.

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• Added code for string variables

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Commits on Sep 13, 2024

• Added the first part of netcdf output to file in layers.

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• update layer output code to write all buffers.

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• Clean up of NetcdfOutputWriterUtils.cpp

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• Recorded data needed for offsets with mpi.

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• Delete comment for unneeded function.

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