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47 Open 17 Closed
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Issues list

[BUG] Pipeline model parallel > 1 does fails Evo2 training bug Something isn't working Evo2
#815 opened Apr 9, 2025 by dorotat-nv
[BUG] Evo2 training does not work with tp>1 when num_attention_heads is not divisible by tp bug Something isn't working Evo2
#814 opened Apr 9, 2025 by dorotat-nv
2
[BUG] Evo2 pretraining diverges for TE > 1.13 bug Something isn't working Evo2
#794 opened Mar 31, 2025 by dorotat-nv
[BUG] Broken pipeline parallel for ESM2 bug Something isn't working ESM2
#784 opened Mar 25, 2025 by dorotat-nv
1
1
[BUG] failing geneformer tutorial geneformer_cellxgene_tutorial.ipynb bug Something isn't working
#778 opened Mar 24, 2025 by dorotat-nv
[BUG] failing test test_train_evo2_stop_at_max_steps_and_continue for Evo2 bug Something isn't working Evo2
#769 opened Mar 19, 2025 by dorotat-nv
2
[BUG] Failing test_train_evo2_stops unit test bug Something isn't working Evo2
#760 opened Mar 17, 2025 by dorotat-nv
[BUG] ESM2 training does not resume from checkpoint using train_esm2 bug Something isn't working ESM2
#757 opened Mar 14, 2025 by dorotat-nv
1
Move unit test test_hyena_operators to NeMo Evo2
#750 opened Mar 12, 2025 by dorotat-nv
[Feature] Allow early training termination at specific step using Trainer.max_steps without modifying LR schedule ie from full convergence run Evo2
#749 opened Mar 12, 2025 by dorotat-nv
@dorotat-nv
[Feature] Flash attention v3 support
#735 opened Mar 8, 2025 by jstjohn
[BUG] "7b_arc_longcontext" evo2 training unit test on 1 gpu too memory consuming bug Something isn't working
#731 opened Mar 7, 2025 by dorotat-nv
1
Use faster direct call of train/predict methods in test scripts.
#720 opened Mar 5, 2025 by jstjohn
1
Clean up and document scripts in the evo2/utils/ subdirectories. Split out useful functions.
#719 opened Mar 5, 2025 by jstjohn
Split padding logic out of the batch collate function.
#718 opened Mar 5, 2025 by jstjohn
[BUG] /opt/nvidia/nvidia_entrypoint.sh: line 55: /workspace/bionemo2/bin/bash: No such file or directory bug Something isn't working
#711 opened Mar 1, 2025 by TSLQ
[Feature] Inquiry Regarding Multi-Node Training Support in BioNeMo Framework
#700 opened Feb 24, 2025 by hbsun2113
5
[Feature] Add golden value for metric logging in ESM2 finetuning
#684 opened Feb 10, 2025 by sichu2023
@farhadrgh
[BUG] Cannot download artefacts without NGC API KEY bug Something isn't working
#682 opened Feb 7, 2025 by dorotat-nv
1
test DDP parallelism without usage of mock enhancement New feature or request
#680 opened Feb 6, 2025 by dorotat-nv
Allow definition of task heads other than MLP/CNN for ESM2 finetuning
#674 opened Jan 31, 2025 by farhadrgh
1
[BUG] conftest in rendered documentation bug Something isn't working
#667 opened Jan 29, 2025 by pstjohn
AWS Deep Learning AMI not compatible with multi-GPU training of MolMIM bug Something isn't working
#644 opened Jan 23, 2025 by xinyu-dev
Make model weights searchable on NGC bug Something isn't working
#613 opened Jan 16, 2025 by xinyu-dev
1
Add descriptions for the params in the config YAML file of MolMIM enhancement New feature or request
#612 opened Jan 16, 2025 by xinyu-dev
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