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NaegleLab

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  1. OpenEnsembles OpenEnsembles Public

    Code for ensemble clustering

    Jupyter Notebook 102 15

  2. KSTAR KSTAR Public

    Kinase-Substrate Translation to Activity Relationships

    Python 5

  3. ASPEN ASPEN Public

    ASPEN repository, associated with 2019 publication

    Python 3 3

  4. ProteomeScout ProteomeScout Public

    PHP

  5. ASPEN_dev ASPEN_dev Public

    Python

  6. Competition_modeling Competition_modeling Public

    Notes and code from my rotation with the Naegle lab (modeling competition between phosphotyrosine binding partners)

    Jupyter Notebook

Repositories

Showing 10 of 16 repositories
  • PTM-POSE Public

    Python package for projecting PTMs onto any splice event quantification data, such as those from MATS or SpliceSeq

    NaegleLab/PTM-POSE’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 20, 2024
  • CoDIAC Public
    NaegleLab/CoDIAC’s past year of commit activity
    Python 0 0 3 0 Updated Sep 18, 2024
  • KSTAR Public

    Kinase-Substrate Translation to Activity Relationships

    NaegleLab/KSTAR’s past year of commit activity
    Python 5 0 7 0 Updated Sep 18, 2024
  • proteome-scout-3 Public
    NaegleLab/proteome-scout-3’s past year of commit activity
    Python 0 0 7 1 Updated Sep 9, 2024
  • SH2_contact_analysis Public

    CoDIAC-based analysis of the human SH2 domain family

    NaegleLab/SH2_contact_analysis’s past year of commit activity
    Gherkin 0 GPL-3.0 1 0 0 Updated Jul 18, 2024
  • ExonPTMapper Public

    Python package for processing exon information from Ensembl/Biomart, mapping this information to PTM information from ProteomeScout, and doing downstream analysis

    NaegleLab/ExonPTMapper’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jul 1, 2024
  • PTM_Splicing_Analysis Public

    Contains all code used to generate data and figures for the following manuscript:

    NaegleLab/PTM_Splicing_Analysis’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jun 9, 2024
  • ProteomeScoutAPI Public
    NaegleLab/ProteomeScoutAPI’s past year of commit activity
    Python 0 GPL-3.0 0 6 0 Updated Oct 14, 2022
  • KinPred Public

    KinPred code for unification of kinase-prediction resources

    NaegleLab/KinPred’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 10, 2022
  • KSTAR_Applications Public

    Code demonstrating KSTAR examples and as published

    NaegleLab/KSTAR_Applications’s past year of commit activity
    Jupyter Notebook 0 AGPL-3.0 0 0 0 Updated Apr 8, 2022
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