New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

PFAM link fix #3

Open

bj8th opened this issue Nov 6, 2019 · 2 comments

bj8th commented Nov 6, 2019

ProteomeScout > ptmscout_web > ptmworker > helpers > pfam_tools.py

New API for accessing pfam

Author

bj8th commented Nov 6, 2019 •

edited

Loading

generating from sequence - can use PfamScan or HMMER to access.
PfamScan : https://www.ebi.ac.uk/Tools/pfa/pfamscan/

significant amount of time to generate Pfam Scores. Requires email address to access

HMMER : https://hmmer-web-docs.readthedocs.io/en/latest/index.html

only takes a few seconds to generate / pull PFAM scores

currently moving forward using HMMER

Author

bj8th commented Nov 6, 2019

PFAM - pulling based on protein ID
http://pfam.xfam.org/help#tabview=tab11

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment