Uniprot-RefSeq cross-ref tool

[bj8th]

Current ProteomeScout uses PICR tools - no longer active

[bj8th]

May be able to use Uniprot to cross-ref with RefSeq

How Uniprot cross-references with RefSeq:
https://www.uniprot.org/help/ncbi_mappings
As per a protocol we have formalized with the NCBI, we create a RefSeq protein-centric mapping. If a UniProtKB protein (canonical or isoform sequence)

• is 100% identical (over the entire sequence length) to a RefSeq protein and is from the same organism or
• has common EMBL/DDBJ/GenBank protein accession numbers (CDS, protein_id)

then that RefSeq accession is mapped to the UniProtKB protein and consequently the entry will also get the corresponding GeneID cross-reference.

[bj8th]

updated picr_tools to use Uniprot API for reference into Uniprot and RefSeq