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staging for next version
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Felipe da Veiga Leprevost committed Dec 6, 2022
1 parent 5a51cc8 commit cbc5d0e
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12 changes: 1 addition & 11 deletions Changelog
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### Added
- Added new flag `--removecontam` to the report command to remove contaminants from the reports
- Added a new combined_psm report to abacus (beta)


### Changed
- Updated the TMT-Integrator to match with the version v4.0.0
- Updated the pickedFDR filter
- The pipeline command now accepts annotation files with prefixes
- Updated PTMProphet to the latest release
- Updated the database fetch with the new UniProt API (The new API is still unstable, people might experience hicups with certain cases, specially non-model organisms without reviewed sequences)


### Fixed
- Contaminant tags are now added to Human sequences as well
- Several minor fixes and updates
- Added a fix to fix errorrs causes by division-by-zero errors (PR by @chhh)
- Fixed the protein coverage calculations to take into account all peptides
- Adjusted the msstats file format, added Purity to all plex sizes.
2 changes: 1 addition & 1 deletion Makefile
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Expand Up @@ -6,7 +6,7 @@ BINARY = philosopher
VERSION = $(shell date +%Y%m%d)
BUILD = $(shell date +%Y%m%d%H%M)

TAG = v4.6.0
TAG = v4.6.1
RC = RC-1

LDFLAGS = -ldflags "-w -s -extldflags -static -X main.version=${TAG} -X main.build=${BUILD}"
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