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Philosopher 2.1.1
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@prvst prvst released this 30 Jan 20:32
· 1795 commits to master since this release
v2.1.1
d5b4113
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Learn about vigilant mode.

Added

  • Optional, faster alternative protein inference algorithm (not fully tested yet).
  • Support for iTRAQ 4 and 8.

Changed

  • Added deisotoping parameter to MSFragger section in the pipeline configuration file.
  • Updated to support MSFragger 2.3 and TMT-Integrator 1.1.2

Fixed

  • Generic FASTA parser is now checking the decoy status of all entries.
  • Fixed minor issue with some unmodified peptides being marked as oxidized in some report files.
  • Fixed how some terminal modifications were shown (due to capitalization).
  • Fixed the sorting order of the headers in reprint.tsv files.
  • FASTA protein report (writing a file containing the sequences of proteins passing 1% FDR) is back to the report command.
  • Fixed typo in ProteinProbability in Abacus pipeline command.

Snapcraft

  • snap install philosopher

Docker images

  • docker pull prvst/philosopher:2.1.1
  • docker pull prvst/philosopher:latest
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