Feature/updated gradio app

.github/workflows/build-test-publish.yaml

@@ -18,7 +18,7 @@ permissions:
   contents: write
 
 jobs:
-  
+
   check-version-txt:
     runs-on: ubuntu-latest
     steps:

.github/workflows/ci-test.yaml

@@ -0,0 +1,42 @@
+name: CI
+
+on:
+    push:
+        branches:
+            - main
+    pull_request:
+        branches:
+            - main
+    workflow_dispatch: {}
+
+permissions:
+    contents: read
+
+jobs:
+    ci:
+        runs-on: ubuntu-latest
+
+        steps:
+            - name: Checkout repository
+              uses: actions/checkout@v4
+
+            - name: Install uv
+              uses: astral-sh/setup-uv@v7
+              with:
+                  version: "0.7.19"
+                  enable-cache: true
+                  cache-dependency-glob: |
+                      pyproject.toml
+                      uv.lock
+
+            - name: Install Python
+              run: uv python install
+
+            - name: Install the project
+              run: uv sync --locked --all-extras --dev
+
+            - name: Lint (run.sh lint:ci)
+              run: /bin/bash -x run.sh lint:ci
+
+            - name: Tests (run.sh test:ci)
+              run: /bin/bash -x run.sh test:ci

.gitignore

@@ -218,4 +218,4 @@ src/cosinor_lite/states_info.py
 src/cosinor_lite/cities.json
 "README 2.md"
 
-.DS_Store
+.DS_Store

.pre-commit-config.yaml

@@ -1,106 +1,40 @@
-# See https://pre-commit.com for more information
-# See https://pre-commit.com/hooks.html for more hooks
 repos:
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.4.0
+    rev: v6.0.0
     hooks:
-      # Fails if there are any ">>>>>" lines in files due to merge conflicts.
-      - id: check-merge-conflict
-      # Trims trailing whitespace. Allow a single space on the end of .md lines for hard line breaks.
       - id: trailing-whitespace
-        args: [--markdown-linebreak-ext=md]
-      # Makes sure files end in a newline and only a newline;
       - id: end-of-file-fixer
-      # Attempts to load all TOML files to verify syntax.
-      - id: check-toml
-      # Attempts to load all yaml files to verify syntax; unsafe: only check syntax, do not load yaml
       - id: check-yaml
-        args: ["--unsafe"]
-      # Check for symlinks that do not point to anything.
-      - id: check-symlinks
-      # Fail if staged files are above a certain size.
-      # To add a large file, use 'git lfs track <file>; git add <file> to track large files with
-      # git-lfs rather than commiting them directly to the git history
+      - id: check-toml
       - id: check-added-large-files
-        args: ["--maxkb=500"]
-
-        # HALT! Before you exclude a large file and commit it, forever
-        # bloating our repo size, did you:
-        # (1) use a CLI tool like imageoptim to compress them if they are images
-        # (2) think hard about whether using DVC or git-lfs is more appropriate
-        #     for the file--such as in the case of CSV files or other data
-        # This can be confusing. Reach out for help in our chat to help decide
-        # how to deal adding these large files you have :)
-        exclude: |
-          (?x)(
-              ^example/large/file.csv|
-              ^example/large/sklearn-model.pkl
-          )
-      # Sort requirements in requirements.txt files.
-      - id: requirements-txt-fixer
-      # Prevent addition of new git submodules.
-      - id: forbid-new-submodules
-      # Prevent committing directly to trunk (since Bitbucket wants us to pay for this feature)
-      - id: no-commit-to-branch
-        args: ["--branch=main"]
-      # Detects the presence of private keys
-      - id: detect-private-key
 
-  - repo: https://github.com/charliermarsh/ruff-pre-commit
-    rev: "v0.0.261"
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.14.6
     hooks:
       - id: ruff
-        args: [--exit-non-zero-on-fix, --config=./pyproject.toml]
-
-  # - repo: https://github.com/pre-commit/mirrors-mypy
-  #   rev: "v1.2.0"
-  #   hooks:
-  #     - id: mypy
-  #       args:
-  #         [
-  #           --no-strict-optional,
-  #           --ignore-missing-imports,
-  #           --config-file=./pyproject.toml,
-  #         ]
-
-  # - repo: https://github.com/psf/black
-  #   rev: 23.1.0
-  #   hooks:
-  #     - id: black
-  #       args:
-  #         - --config=./pyproject.toml
+        args: [--fix]
+        exclude: ^app\.py$
+      - id: ruff-format
 
-  # - repo: https://github.com/PyCQA/pylint
-  #   rev: v2.16.3
-  #   hooks:
-  #     - id: pylint
-  #       args:
-  #         - --rcfile=./pyproject.toml
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.18.2
+    hooks:
+      - id: mypy
+        exclude: ^app\.py$
 
-  # - repo: https://github.com/PyCQA/flake8
-  #   rev: 6.0.0
-  #   hooks:
-  #     - id: flake8
-  #       args:
-  #         - --toml-config=./pyproject.toml
-  #       additional_dependencies:
-  #         - radon
-  #         - flake8-docstrings
-  #         - Flake8-pyproject
+  - repo: https://github.com/kynan/nbstripout
+    rev: 0.8.2
+    hooks:
+      - id: nbstripout
 
-  # - repo: https://github.com/pycqa/isort
-  #   rev: 5.12.0
-  #   hooks:
-  #     - id: isort
-  #       args:
-  #         - --settings-path=./pyproject.toml
+  - repo: https://github.com/Yelp/detect-secrets
+    rev: v1.5.0
+    hooks:
+      - id: detect-secrets
 
-  # - repo: https://github.com/PyCQA/autoflake
-  #   rev: v2.0.1
-  #   hooks:
-  #     - id: autoflake
-  #       args:
-  #         - --in-place
-  #         - --remove-all-unused-imports
-  #         - --remove-unused-variable
-  #         - --ignore-init-module-imports
+  - repo: https://github.com/econchick/interrogate
+    rev: 1.7.0
+    hooks:
+      - id: interrogate
+        args: ["--fail-under=70", "-vvv"]
+        files: "^src/"

.vscode/settings.json

@@ -9,14 +9,23 @@
     "python.defaultInterpreterPath": "${workspaceFolder}/.venv/bin/python",
     // ─── Ruff: formatter, linter, import sorter ────────
     // Formatting + code actions on save
+    // "[python]": {
+    //     "editor.defaultFormatter": "charliermarsh.ruff", // Ruff formats & sorts imports
+    //     "editor.formatOnSave": true,
+    //     "editor.codeActionsOnSave": {
+    //         "source.organizeImports": "explicit", // Ruff handles import‑sorting:contentReference[oaicite:0]{index=0}
+    //         "source.fixAll": "explicit" // Ruff auto‑fixes lint on save:contentReference[oaicite:1]{index=1}
+    //     }
+    // },
     "[python]": {
-        "editor.defaultFormatter": "charliermarsh.ruff", // Ruff formats & sorts imports
+        "editor.defaultFormatter": "charliermarsh.ruff",
         "editor.formatOnSave": true,
         "editor.codeActionsOnSave": {
-            "source.organizeImports": "explicit", // Ruff handles import‑sorting:contentReference[oaicite:0]{index=0}
-            "source.fixAll": "explicit" // Ruff auto‑fixes lint on save:contentReference[oaicite:1]{index=1}
+            "source.fixAll": true,
+            "source.fixAll.ruff": true,
+            "source.organizeImports": true
         }
-    },
+    }
     // ─── Ty: super‑fast type checking / language server ─
     // After installing the “ty” VS Code extension:
     // "python.languageServer": "None",          // disable Pylance’s LS to avoid clashing:contentReference[oaicite:2]{index=2}
@@ -38,4 +47,4 @@
             "color": "lightgreen"
         }
     ]
-}
+}

Makefile

@@ -1,5 +1,3 @@
-# Execute the "targets" in this file with `make <target>` e.g., `make test`.
-#
 # You can also run multiple in sequence, e.g. `make clean lint test serve-coverage-report`
 
 build:
@@ -20,18 +18,6 @@ lint:
 lint-ci:
 	bash run.sh lint:ci
 
-publish-prod:
-	bash run.sh publish:prod
-
-publish-test:
-	bash run.sh publish:test
-
-release-prod:
-	bash run.sh release:prod
-
-release-test:
-	bash run.sh release:test
-
 serve-coverage-report:
 	bash run.sh serve-coverage-report
 
@@ -43,6 +29,3 @@ test-quick:
 
 test:
 	bash run.sh run-tests
-
-test-wheel-locally:
-	bash run.sh test:wheel-locally