Prepare for release 3.5

[bittremieux]

No description provided.

[codecov]

Codecov Report

Merging #233 (abc41f3) into main (6299bd2) will decrease coverage by 6.23%.
Report is 10 commits behind head on main.
The diff coverage is 36.36%.

@@            Coverage Diff             @@
##             main     #233      +/-   ##
==========================================
- Coverage   87.63%   81.41%   -6.23%     
==========================================
  Files          12       11       -1     
  Lines         833      807      -26     
==========================================
- Hits          730      657      -73     
- Misses        103      150      +47     

Files Changed	Coverage Δ
casanovo/config.py	90.24% <ø> (+3.40%)	⬆️
casanovo/denovo/model.py	85.05% <17.64%> (-10.75%)	⬇️
casanovo/casanovo.py	91.05% <100.00%> (+27.42%)	⬆️
casanovo/data/ms_io.py	96.66% <100.00%> (ø)
casanovo/denovo/model_runner.py	49.54% <100.00%> (-38.05%)	⬇️

... and 4 files with indirect coverage changes

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