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Include the dataset_description.json as output #2

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Include the dataset_description.json as output #2

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7 changes: 6 additions & 1 deletion setup-commands/xnat2bids/xnat2bids.py
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Original file line number Diff line number Diff line change
Expand Up @@ -189,7 +189,7 @@ def copyScanBidsFiles(destDirBase, bidsScanList):
for f in scan.sourceFiles:
shutil.copy(f, destDir)

version = "1.0"
version = "1.1"
args = docopt(__doc__, version=version)

inputDir = args['<inputDir>']
Expand All @@ -201,6 +201,11 @@ def copyScanBidsFiles(destDirBase, bidsScanList):
# First check if the input directory is a session directory
sessionBidsScans = bidsifySession(inputDir)

# BIDS specification 1.2.1: Every BIDS dataset MUST include the dataset_description.json file
sessionBidsJsonPath = os.path.join(inputDir, 'RESOURCES', 'BIDS', 'dataset_description.json')
if os.path.exists(sessionBidsJsonPath):
shutil.copy(sessionBidsJsonPath, outputDir)

bidsSubjectMap = {}
if sessionBidsScans:
subject = getSubjectForBidsScans(sessionBidsScans)
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