Package maintenance

OHDSI · Jul 20, 2023 · 777f68a · 777f68a
1 parent 90714e2
commit 777f68a
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Showing 37 changed files with 48 additions and 41 deletions.
diff --git a/R/ConceptSets.R b/R/ConceptSets.R
@@ -347,7 +347,6 @@ exportConceptSets <- function(cohortDefinitionSet, exportFolder, minCellCount, d
     incremental = FALSE,
     cohortId = conceptSetsExport$cohortId
   )
-
 }
 
 runConceptSetDiagnostics <- function(connection,

diff --git a/R/RunDiagnostics.R b/R/RunDiagnostics.R
@@ -671,10 +671,12 @@ executeDiagnostics <- function(cohortDefinitionSet,
   }
 
   # Always export concept sets to csv
-  exportConceptSets(cohortDefinitionSet = cohortDefinitionSet,
-                    exportFolder = exportFolder,
-                    minCellCount = minCellCount,
-                    databaseId = databaseId)
+  exportConceptSets(
+    cohortDefinitionSet = cohortDefinitionSet,
+    exportFolder = exportFolder,
+    minCellCount = minCellCount,
+    databaseId = databaseId
+  )
 
   # Concept set diagnostics -----------------------------------------------
   if (runIncludedSourceConcepts ||

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/CreatingAStudyPackage.html b/docs/articles/CreatingAStudyPackage.html
diff --git a/docs/articles/DatabaseModeInDiagnosticsExplorer.html b/docs/articles/DatabaseModeInDiagnosticsExplorer.html
diff --git a/docs/articles/RunningCohortDiagnostics.html b/docs/articles/RunningCohortDiagnostics.html
diff --git a/docs/articles/ViewingResultsUsingDiagnosticsExplorer.html b/docs/articles/ViewingResultsUsingDiagnosticsExplorer.html
diff --git a/docs/articles/WhatIsCohortDiagnostics.html b/docs/articles/WhatIsCohortDiagnostics.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -7,5 +7,5 @@ articles:
   RunningCohortDiagnostics: RunningCohortDiagnostics.html
   ViewingResultsUsingDiagnosticsExplorer: ViewingResultsUsingDiagnosticsExplorer.html
   WhatIsCohortDiagnostics: WhatIsCohortDiagnostics.html
-last_built: 2023-05-16T17:32Z
+last_built: 2023-07-20T14:57Z
 
diff --git a/docs/reference/CohortDiagnostics-package.html b/docs/reference/CohortDiagnostics-package.html
diff --git a/docs/reference/checkInputFileEncoding.html b/docs/reference/checkInputFileEncoding.html
diff --git a/docs/reference/createDiagnosticsExplorerZip.html b/docs/reference/createDiagnosticsExplorerZip.html
diff --git a/docs/reference/createMergedResultsFile.html b/docs/reference/createMergedResultsFile.html
diff --git a/docs/reference/createResultsDataModel.html b/docs/reference/createResultsDataModel.html
diff --git a/docs/reference/executeDiagnostics.html b/docs/reference/executeDiagnostics.html
diff --git a/docs/reference/getCdmDataSourceInformation.html b/docs/reference/getCdmDataSourceInformation.html
diff --git a/docs/reference/getCohortCounts.html b/docs/reference/getCohortCounts.html
diff --git a/docs/reference/getDataMigrator.html b/docs/reference/getDataMigrator.html
diff --git a/docs/reference/getDefaultCovariateSettings.html b/docs/reference/getDefaultCovariateSettings.html
diff --git a/docs/reference/getDefaultVocabularyTableNames.html b/docs/reference/getDefaultVocabularyTableNames.html
diff --git a/docs/reference/getResultsDataModelSpecifications.html b/docs/reference/getResultsDataModelSpecifications.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/launchDiagnosticsExplorer.html b/docs/reference/launchDiagnosticsExplorer.html
diff --git a/docs/reference/migrateDataModel.html b/docs/reference/migrateDataModel.html
diff --git a/docs/reference/runCohortRelationshipDiagnostics.html b/docs/reference/runCohortRelationshipDiagnostics.html
diff --git a/docs/reference/runCohortTimeSeriesDiagnostics.html b/docs/reference/runCohortTimeSeriesDiagnostics.html
diff --git a/docs/reference/timeExecution.html b/docs/reference/timeExecution.html
diff --git a/docs/reference/uploadResults.html b/docs/reference/uploadResults.html
diff --git a/inst/doc/RunningCohortDiagnostics.pdf b/inst/doc/RunningCohortDiagnostics.pdf
diff --git a/inst/doc/ViewingResultsUsingDiagnosticsExplorer.pdf b/inst/doc/ViewingResultsUsingDiagnosticsExplorer.pdf
diff --git a/inst/doc/WhatIsCohortDiagnostics.pdf b/inst/doc/WhatIsCohortDiagnostics.pdf
diff --git a/inst/shiny/DiagnosticsExplorer/global.R b/inst/shiny/DiagnosticsExplorer/global.R
@@ -90,3 +90,4 @@ dataSource <-
 
 
 
+
diff --git a/inst/sql/sql_server/UpdateVersionNumber.sql b/inst/sql/sql_server/UpdateVersionNumber.sql
@@ -1,5 +1,5 @@
 {DEFAULT @package_version = package_version}
-{DEFAULT @version_number = '3.2.2'}
+{DEFAULT @version_number = '3.2.3'}
 
 DELETE FROM @database_schema.@table_prefix@package_version;
 INSERT INTO @database_schema.@table_prefix@package_version (version_number) VALUES ('@version_number');
@@ -8,3 +8,4 @@ INSERT INTO @database_schema.@table_prefix@package_version (version_number) VALU
 
 
 
+