Release v3.3.0 #1096
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Release v3.3.0 #1096
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* FIx for namespace of characterization_view * Update server.R
* Added forced removal of cohorts with 0 counts from cohort definition set before analysis steps * Updated version number * Added utility to shiny deploy and updated shiny app aspects to enforce OhdsiShinyModules 2.0.0 * Added code to run on sampled cohorts * removed debug code * rcheck changes * fixes for errors and warnings * removal of warning * nchar fix for null sql * have cohort concept sets function exit cleanly * Fix for empty concept sets returned * Fix for empty concept sets returned * Fix exported null concepts in included_source_concept result * Fix exported null concepts in included_source_concept result * renamed migration file * renamed migration files * Fixes for export and migration of source concepts * Package Maintenance * removed broken migrations * concept_id instead of 0 where not set
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## main #1096 +/- ##
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- Coverage 90.34% 88.59% -1.76%
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Files 19 19
Lines 3606 3666 +60
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- Hits 3258 3248 -10
- Misses 348 418 +70 ☔ View full report in Codecov by Sentry. |
# Conflicts: # DESCRIPTION # NEWS.md # R/CohortCharacterizationDiagnostics.R # docs/404.html # docs/articles/CreatingAStudyPackage.html # docs/articles/DatabaseModeInDiagnosticsExplorer.html # docs/articles/RunningCohortDiagnostics.html # docs/articles/ViewingResultsUsingDiagnosticsExplorer.html # docs/articles/WhatIsCohortDiagnostics.html # docs/articles/index.html # docs/authors.html # docs/index.html # docs/news/index.html # docs/pkgdown.yml # docs/reference/CohortDiagnostics-package.html # docs/reference/checkInputFileEncoding.html # docs/reference/createDiagnosticsExplorerZip.html # docs/reference/createMergedResultsFile.html # docs/reference/createResultsDataModel.html # docs/reference/executeDiagnostics.html # docs/reference/getCdmDataSourceInformation.html # docs/reference/getCohortCounts.html # docs/reference/getDataMigrator.html # docs/reference/getDefaultCovariateSettings.html # docs/reference/getDefaultVocabularyTableNames.html # docs/reference/getResultsDataModelSpecifications.html # docs/reference/index.html # docs/reference/launchDiagnosticsExplorer.html # docs/reference/migrateDataModel.html # docs/reference/runCohortRelationshipDiagnostics.html # docs/reference/runCohortTimeSeriesDiagnostics.html # docs/reference/uploadResults.html # docs/sitemap.xml # extras/CohortDiagnostics.pdf # inst/doc/RunningCohortDiagnostics.pdf # inst/doc/ViewingResultsUsingDiagnosticsExplorer.pdf # inst/doc/WhatIsCohortDiagnostics.pdf # inst/sql/sql_server/UpdateVersionNumber.sql
# Conflicts: # DESCRIPTION # NEWS.md # docs/404.html # docs/articles/CreatingAStudyPackage.html # docs/articles/DatabaseModeInDiagnosticsExplorer.html # docs/articles/RunningCohortDiagnostics.html # docs/articles/ViewingResultsUsingDiagnosticsExplorer.html # docs/articles/WhatIsCohortDiagnostics.html # docs/articles/index.html # docs/authors.html # docs/index.html # docs/news/index.html # docs/pkgdown.yml # docs/reference/CohortDiagnostics-package.html # docs/reference/checkInputFileEncoding.html # docs/reference/createDiagnosticsExplorerZip.html # docs/reference/createMergedResultsFile.html # docs/reference/createResultsDataModel.html # docs/reference/executeDiagnostics.html # docs/reference/getCdmDataSourceInformation.html # docs/reference/getCohortCounts.html # docs/reference/getDataMigrator.html # docs/reference/getDefaultCovariateSettings.html # docs/reference/getDefaultVocabularyTableNames.html # docs/reference/getResultsDataModelSpecifications.html # docs/reference/index.html # docs/reference/launchDiagnosticsExplorer.html # docs/reference/migrateDataModel.html # docs/reference/runCohortRelationshipDiagnostics.html # docs/reference/runCohortTimeSeriesDiagnostics.html # docs/reference/uploadResults.html # docs/sitemap.xml # extras/CohortDiagnostics.pdf # inst/doc/RunningCohortDiagnostics.pdf # inst/doc/ViewingResultsUsingDiagnosticsExplorer.pdf # inst/doc/WhatIsCohortDiagnostics.pdf # inst/sql/sql_server/UpdateVersionNumber.sql
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This release resolves a large number of issues with the package but will Require a cohort generator release first for the sampling functionality (which should greatly speed up phenotype development).