Update test_SI2Conc_LEK_Edinburgh_UK.py #692
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| name: Test and Deploy | |
| on: | |
| - push | |
| - pull_request | |
| jobs: | |
| main: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.8] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| cache-dependency-path: | | |
| setup.py | |
| notebooks/requirements.txt | |
| - name: Install dependencies | |
| run: | | |
| pip install wheel pytest | |
| pip install . | |
| - name: Test with pytest | |
| run: | | |
| pytest . | |
| - name: Determine if notebooks should be built | |
| run: | | |
| echo Printing a few variables for debugging | |
| echo "GITHUB_REF = $GITHUB_REF" | |
| echo "GITHUB_EVENT_NAME = $GITHUB_EVENT_NAME" | |
| echo "GITHUB_REPOSITORY_OWNER = $GITHUB_REPOSITORY_OWNER" | |
| if [[ $GITHUB_REPOSITORY_OWNER == 'OSIPI' && $GITHUB_REF = 'refs/heads/develop' && $GITHUB_EVENT_NAME == 'push' ]]; then | |
| echo "CONTINUE=true" >> "$GITHUB_ENV" | |
| else | |
| echo "CONTINUE=false" >> "$GITHUB_ENV" | |
| fi | |
| # End job early if we are on a fork OR if we are not on the "develop" branch OR if we are on a pull request | |
| - name: END JOB EARLY? | |
| if: env.CONTINUE == 'false' | |
| run: echo Ending job early. No need to build notebooks. | |
| - name: Convert contributors csv to md | |
| if: env.CONTINUE == 'true' | |
| run: | | |
| pip install -r notebooks/requirements.txt | |
| python doc/convert_to_md.py | |
| - name: Build the book | |
| if: env.CONTINUE == 'true' | |
| run: | | |
| jupyter-book build notebooks/ | |
| touch notebooks/_build/html/.nojekyll | |
| - name: Re-organize files | |
| if: env.CONTINUE == 'true' | |
| run: | | |
| mkdir out | |
| mv notebooks/_build/html out/docs | |
| mv test out/test | |
| - name: Deploy notebook's html to DCE-DSC-MRI_TestResults repository | |
| if: env.CONTINUE == 'true' | |
| uses: cpina/github-action-push-to-another-repository@master | |
| env: | |
| API_TOKEN_GITHUB: ${{ secrets.DEMO_TOKEN }} | |
| with: | |
| source-directory: 'out' | |
| destination-github-username: 'OSIPI' | |
| destination-repository-name: 'DCE-DSC-MRI_TestResults' | |
| user-email: [email protected] |