Version 10.0

Distributed with version 10.0 of the OSPSuite
Open-Systems-Pharmacology · Oct 6, 2021 · ebd6fb5 · ebd6fb5
2 parents fed9716 + 5578bd5
commit ebd6fb5
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Showing 577 changed files with 34,971 additions and 15,723 deletions.
diff --git a/OSPSuite.Core.sln b/OSPSuite.Core.sln
@@ -29,14 +29,10 @@ Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.Core.IntegrationTe
 EndProject
 Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.Presentation", "src\OSPSuite.Presentation\OSPSuite.Presentation.csproj", "{5CBFB5CA-1F1B-44CB-9C51-0C7904B12AD5}"
 EndProject
-Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.Presentation.Importer", "src\OSPSuite.Presentation.Importer\OSPSuite.Presentation.Importer.csproj", "{A9ABCE50-65D6-4E4C-A4F1-730A4FEECC46}"
-EndProject
 Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.Presentation.Tests", "tests\OSPSuite.Presentation.Tests\OSPSuite.Presentation.Tests.csproj", "{4B2DDBFB-6DC8-45D0-B24E-0B64FB74B93C}"
 EndProject
 Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.UI", "src\OSPSuite.UI\OSPSuite.UI.csproj", "{AC617E4A-028B-4BFF-993C-3EA34EB042B4}"
 EndProject
-Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.UI.Importer", "src\OSPSuite.UI.Importer\OSPSuite.UI.Importer.csproj", "{6B501AF0-ACC0-4051-8FDE-9E8A92DB22D8}"
-EndProject
 Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.UI.Tests", "tests\OSPSuite.UI.Tests\OSPSuite.UI.Tests.csproj", "{D17000A2-5981-44EE-85FA-FDE93DF8D8D3}"
 EndProject
 Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.Starter", "tests\OSPSuite.Starter\OSPSuite.Starter.csproj", "{6457DB7A-E3C9-48E0-A886-601570E0C060}"
@@ -55,9 +51,9 @@ Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.Infrastructure.Imp
 EndProject
 Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.Presentation.Serialization", "src\OSPSuite.Presentation.Serialization\OSPSuite.Presentation.Serialization.csproj", "{47A7A6BA-C804-4A5B-A28F-535FA46E5FCB}"
 EndProject
-Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "OSPSuite.Infrastructure.Castle", "src\OSPSuite.Infrastructure.Castle\OSPSuite.Infrastructure.Castle.csproj", "{F428C61C-1B1A-42E2-8362-E416260E7B07}"
+Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.Infrastructure.Castle", "src\OSPSuite.Infrastructure.Castle\OSPSuite.Infrastructure.Castle.csproj", "{F428C61C-1B1A-42E2-8362-E416260E7B07}"
 EndProject
-Project("{FAE04EC0-301F-11D3-BF4B-00C04F79EFBC}") = "OSPSuite.Infrastructure.Autofac", "src\OSPSuite.Infrastructure.Autofac\OSPSuite.Infrastructure.Autofac.csproj", "{E29CA1A8-7589-41DD-8280-4D0D9289DDB8}"
+Project("{9A19103F-16F7-4668-BE54-9A1E7A4F7556}") = "OSPSuite.Infrastructure.Autofac", "src\OSPSuite.Infrastructure.Autofac\OSPSuite.Infrastructure.Autofac.csproj", "{E29CA1A8-7589-41DD-8280-4D0D9289DDB8}"
 EndProject
 Global
 	GlobalSection(SolutionConfigurationPlatforms) = preSolution
@@ -101,10 +97,6 @@ Global
 		{5CBFB5CA-1F1B-44CB-9C51-0C7904B12AD5}.Debug|Any CPU.Build.0 = Debug|Any CPU
 		{5CBFB5CA-1F1B-44CB-9C51-0C7904B12AD5}.Release|Any CPU.ActiveCfg = Release|Any CPU
 		{5CBFB5CA-1F1B-44CB-9C51-0C7904B12AD5}.Release|Any CPU.Build.0 = Release|Any CPU
-		{A9ABCE50-65D6-4E4C-A4F1-730A4FEECC46}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
-		{A9ABCE50-65D6-4E4C-A4F1-730A4FEECC46}.Debug|Any CPU.Build.0 = Debug|Any CPU
-		{A9ABCE50-65D6-4E4C-A4F1-730A4FEECC46}.Release|Any CPU.ActiveCfg = Release|Any CPU
-		{A9ABCE50-65D6-4E4C-A4F1-730A4FEECC46}.Release|Any CPU.Build.0 = Release|Any CPU
 		{4B2DDBFB-6DC8-45D0-B24E-0B64FB74B93C}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
 		{4B2DDBFB-6DC8-45D0-B24E-0B64FB74B93C}.Debug|Any CPU.Build.0 = Debug|Any CPU
 		{4B2DDBFB-6DC8-45D0-B24E-0B64FB74B93C}.Release|Any CPU.ActiveCfg = Release|Any CPU
@@ -113,10 +105,6 @@ Global
 		{AC617E4A-028B-4BFF-993C-3EA34EB042B4}.Debug|Any CPU.Build.0 = Debug|Any CPU
 		{AC617E4A-028B-4BFF-993C-3EA34EB042B4}.Release|Any CPU.ActiveCfg = Release|Any CPU
 		{AC617E4A-028B-4BFF-993C-3EA34EB042B4}.Release|Any CPU.Build.0 = Release|Any CPU
-		{6B501AF0-ACC0-4051-8FDE-9E8A92DB22D8}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
-		{6B501AF0-ACC0-4051-8FDE-9E8A92DB22D8}.Debug|Any CPU.Build.0 = Debug|Any CPU
-		{6B501AF0-ACC0-4051-8FDE-9E8A92DB22D8}.Release|Any CPU.ActiveCfg = Release|Any CPU
-		{6B501AF0-ACC0-4051-8FDE-9E8A92DB22D8}.Release|Any CPU.Build.0 = Release|Any CPU
 		{D17000A2-5981-44EE-85FA-FDE93DF8D8D3}.Debug|Any CPU.ActiveCfg = Debug|Any CPU
 		{D17000A2-5981-44EE-85FA-FDE93DF8D8D3}.Debug|Any CPU.Build.0 = Debug|Any CPU
 		{D17000A2-5981-44EE-85FA-FDE93DF8D8D3}.Release|Any CPU.ActiveCfg = Release|Any CPU

diff --git a/appveyor-coverage.yml b/appveyor-coverage.yml
@@ -1,19 +1,18 @@
 configuration: Debug
 image: Visual Studio 2019
 
-environment:
-  app_version: '9.0'
+version: '{build}'
 
-version: '$(app_version).{build}'
+init:
+- ps: Update-AppveyorBuild -Version "$($env:ospsuite_version).$($env:appveyor_build_version)"
 
-assembly_info:
+dotnet_csproj:
   patch: true
-  file: SolutionInfo.*
-  assembly_version: "{version}"
-  assembly_file_version: "{version}"	
-
-cache:
-  packages -> **\packages.config  
+  file: '**\*.csproj'
+  version: '$(ospsuite_version).$(build_number)'
+  assembly_version: '$(ospsuite_version).$(build_number)'
+  file_version: '$(ospsuite_version).$(build_number)'
+  informational_version: '$(ospsuite_version).$(build_number)'
 
 before_build:
   - nuget sources add -name bddhelper -source https://ci.appveyor.com/nuget/ospsuite-bddhelper 
@@ -25,7 +24,6 @@ before_build:
   - nuget sources add -name funcparser -source https://ci.appveyor.com/nuget/ospsuite-funcparser 
   - nuget sources add -name simmodel -source https://ci.appveyor.com/nuget/ospsuite-simmodel
   - nuget sources add -name cvodes -source https://ci.appveyor.com/nuget/ospsuite-simmodel-solver-cvodes
-  - nuget sources add -name smartxls -source https://ci.appveyor.com/nuget/ospsuite-smartxls
   - nuget install opencover -OutputDirectory packages
   - nuget restore
 
@@ -38,5 +36,4 @@ test_script:
 
 install:  
  - set PATH=C:\Ruby22\bin;C:\\Python34;C:\\Python34\\Scripts;%PATH%"
- - pip install codecov
- - git submodule update --init --recursive
+ - pip install codecov
diff --git a/appveyor.yml b/appveyor.yml
@@ -1,22 +1,18 @@
 configuration: Debug
 image: Visual Studio 2019
 
-# hack until donet patching works with PR
-init: 
-  - cmd: if DEFINED APPVEYOR_PULL_REQUEST_NUMBER (Set build_number=1) ELSE (Set build_number=%APPVEYOR_BUILD_NUMBER%)
+version: '{build}'
 
-environment:
-  app_version: '9.0'
-  APPVEYOR_BLOCK_DOTNETCORE_TESTS_AUTORUN: true
-
-version: '$(app_version).{build}'
+init:
+- ps: Update-AppveyorBuild -Version "$($env:ospsuite_version).$($env:appveyor_build_version)"
 
 dotnet_csproj:
   patch: true
   file: '**\*.csproj'
-  assembly_version: '$(app_version).$(build_number)'
-  file_version: '$(app_version).$(build_number)'
-  informational_version: '$(app_version).$(build_number)'
+  version: '$(ospsuite_version).$(build_number)'
+  assembly_version: '$(ospsuite_version).$(build_number)'
+  file_version: '$(ospsuite_version).$(build_number)'
+  informational_version: '$(ospsuite_version).$(build_number)'
 
 before_build:
   - nuget sources add -name bddhelper -source https://ci.appveyor.com/nuget/ospsuite-bddhelper 
@@ -39,6 +35,18 @@ build:
 
 skip_branch_with_pr: true
 
+pull_requests: 
+  do_not_increment_build_number: true
+
+nuget: 
+  disable_publish_on_pr: false 
+
+skip_tags: true
+
+skip_commits:
+  files:
+    - '*.md'
+
 branches:
   only:
     - develop
@@ -51,23 +59,5 @@ test:
     - OSPSuite.Infrastructure.Tests.dll
     - OSPSuite.R.Tests.dll
     - OSPSuite.UI.Tests.dll
-
-install:
- - git submodule update --init --recursive
-
-skip_tags: true
-
-skip_commits:
-  files:
-    - '*.md'
-
-pull_requests: 
-  do_not_increment_build_number: true     
-
-nuget: 
-  disable_publish_on_pr: true  
+
 
-notifications:
-  - provider: Slack
-    incoming_webhook:      
-      secure: 4MH9Em6TtrKalq6808dhPOqypTfYBJvVlqPaa9akNyFEAs8X080yIO8g1FLt3tNfBN4OpeBnkgrXzf7AqNKV5561x7Coux3ByGrHmsL1sCo=