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45 changes: 45 additions & 0 deletions cinnabar/tests/test_femap.py
Original file line number Diff line number Diff line change
Expand Up @@ -311,6 +311,51 @@ def test_generate_absolute_values_mixed_units():
m.generate_absolute_values()


def test_generate_absolute_values_bi_directional_edges(example_map):
"""Make sure absolute values can be generated with bidirectional edges."""
femap = cinnabar.FEMap()
femap.add_relative_calculation(
labelA="ligA",
labelB="ligB",
value=1.0 * unit.kilocalorie_per_mole,
uncertainty=0.5 * unit.kilocalorie_per_mole,
source="test",
)
femap.add_relative_calculation(
labelA="ligB",
labelB="ligA",
value=-2.0 * unit.kilocalorie_per_mole,
uncertainty=0.5 * unit.kilocalorie_per_mole,
source="test",
)
femap.generate_absolute_values()
abs_df = femap.get_absolute_dataframe()
assert np.allclose(abs_df["DG (kcal/mol)"].values, [-0.75, 0.75])


def test_generate_absolute_values_repeated_edges():
"""Make sure absolute values can be generated with repeated edges."""
femap = cinnabar.FEMap()
femap.add_relative_calculation(
labelA="ligA",
labelB="ligB",
value=1.0 * unit.kilocalorie_per_mole,
uncertainty=0.5 * unit.kilocalorie_per_mole,
source="test",
)
femap.add_relative_calculation(
labelA="ligA",
labelB="ligB",
value=1.5 * unit.kilocalorie_per_mole,
uncertainty=0.1 * unit.kilocalorie_per_mole,
source="test",
)
femap.generate_absolute_values()
abs_df = femap.get_absolute_dataframe()
assert np.allclose(abs_df["DG (kcal/mol)"].values, [-0.74038, 0.74038])
assert np.allclose(abs_df["uncertainty (kcal/mol)"].values, [0.049029, 0.049029])


@pytest.mark.parametrize(
"dataframe_func, expected",
[
Expand Down