More adding of spikeThresh #30
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| name: Non OMV tests | |
| on: | |
| push: | |
| branches: [ master, development, test* ] | |
| pull_request: | |
| branches: [ master, development, test* ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [ 3.7, 3.9 ] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install OMV | |
| run: | | |
| pip install git+https://github.com/OpenSourceBrain/osb-model-validation | |
| pip install 'numpy<=1.23.0' # see https://github.com/OpenSourceBrain/osb-model-validation/issues/91 | |
| - name: Install OSB API | |
| run: | | |
| git clone https://github.com/OpenSourceBrain/OSB_API.git | |
| cd OSB_API/python | |
| python setup.py install | |
| - name: Test Channelpedia related scripts | |
| run: | | |
| cd Channelpedia | |
| pip install pyneuroml | |
| pip install pyelectro | |
| python ChannelpediaToNeuroML2.py HCN1 | |
| python analyse.py | |
| pynml LEMS_Test_HCN1.xml -nogui | |
| - name: Test NMC related scripts | |
| run: | | |
| omv install NEURON | |
| pip install jinja2 | |
| cd NMC/parser | |
| nrnivmodl ../NEURON/ # compile mod files for use here; nrnivmodl installed with Neuron via pip | |
| python ParseAll.py | |
| ls -alt ../NeuroML2/ | |
| omv list -V |