More tests on xpp->lems

.gitignore

@@ -7,3 +7,5 @@
 /XPP/report.txt
 /XPP/fhn.model.xml
 /XPP/LEMS_fhn.xml
+/XPP/LEMS_*.xml
+/XPP/wc.model.xml

XPP/.test.fhn.pynmlxpplems.omt

@@ -1,7 +1,7 @@
 target: fhn.ode
 engine: pyNEURON_XPP_LEMS
 
-mep: .test.fhn.xpp.mep
+mep: .test.fhn.mep
 experiments:
   spikes:
     observables:

XPP/.test.fhn.xpp.omt

@@ -1,7 +1,7 @@
 target: fhn.ode
 engine: XPP
 
-mep: .test.fhn.xpp.mep
+mep: .test.fhn.mep
 experiments:
   spikes:
     observables:

XPP/.test.nca.pynmlxpplems.omt

@@ -0,0 +1,17 @@
+target: nca.ode
+engine: pyNEURON_XPP_LEMS
+
+mep: .test.nca.mep
+experiments:
+  spikes:
+    observables:
+      spike times:
+        file: 
+          path: output.dat
+          columns: [0,14]
+          scaling: [1000, 1]
+        spike detection: 
+          method: threshold
+          threshold: 0
+        tolerance: 0.009999966556292568
+

XPP/.test.nca.xpp.omt

@@ -1,7 +1,7 @@
 target: nca.ode
 engine: XPP
 
-mep: .test.nca.xpp.mep
+mep: .test.nca.mep
 experiments:
   spikes:
     observables:

XPP/.test.wc.mep

@@ -0,0 +1,7 @@
+system: Test XPP
+
+experiments:
+    spikes:
+        expected:
+            spike times: [0.80000001, 5.5999999, 9.4499998, 13.15, 16.799999, 20.4, 24.0, 27.549999, 31.15, 34.700001, 38.200001]
+

XPP/.test.wc.pynmlxpplems.omt

@@ -0,0 +1,17 @@
+target: wc.ode
+engine: pyNEURON_XPP_LEMS
+
+mep: .test.wc.mep
+experiments:
+  spikes:
+    observables:
+      spike times:
+        file: 
+          path: output.dat
+          columns: [0,1]
+          scaling: [1000, 1]
+        spike detection: 
+          method: threshold
+          threshold: 0.53
+        tolerance: 0.009505703422053232
+

XPP/.test.wc.xpp.omt

@@ -0,0 +1,17 @@
+target: wc.ode
+engine: XPP
+
+mep: .test.wc.mep
+experiments:
+  spikes:
+    observables:
+      spike times:
+        file: 
+          path: output.dat
+          columns: [0,1]
+          scaling: [1, 1]
+        spike detection: 
+          method: threshold
+          threshold: 0.53
+        tolerance: 0.00
+

XPP/wc.ode

@@ -0,0 +1,14 @@
+# wilson-cowan
+f(u)=1/(1+exp(-1*(u)))
+par aee=10,aie=8,aei=12,aii=3,ze=.2,zi=4
+par tau=1
+i_e(t)=ie0+ie1*sin(w*t)
+i_i(t)=ii0+ii1*sin(w*t)
+par ie0=0,ie1=0,w=.25
+par ii0=0,ii1=0
+init u=.1,v=.05
+u'=-u+f(aee*u-aie*v-ze+i_e(t))
+v'=(-v+f(aei*u-aii*v-zi+i_i(t)))/tau
+@ total=40
+@ xp=u,yp=v,xlo=-.1,xhi=1,ylo=-.1,yhi=1
+done