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makefile, parseOT2v2.py, and readme_map.json changes to update protoc… #4134

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makefile, parseOT2v2.py, and readme_map.json changes to update protoc… #4134

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52b9d0f
makefile, parseOT2v2.py, and readme_map.json changes to update protoc…
Oct 26, 2022
b234e72
protocol edits and build files for update to 6.1.0
Oct 26, 2022
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2 changes: 1 addition & 1 deletion Makefile
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@@ -1,7 +1,7 @@
SHELL := /bin/bash

MONOREPO_URI := https://github.com/Opentrons/opentrons.git
OT2_VERSION_TAG := v4.3.0
OT2_VERSION_TAG := v6.1.0
OT2_MONOREPO_DIR := ot2monorepoClone

# Parsers output to here
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15 changes: 14 additions & 1 deletion protoBuilds/007992/rna_isolation.ot2.apiv2.py.json
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Expand Up @@ -4449,5 +4449,18 @@
"protocolName": "Viral RNA Isolation (Magnetic Beads)",
"source": "Custom Protocol Request"
},
"modules": []
"modules": [
{
"name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw isolation plate on Magnetic Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "magdeck"
},
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 3 lw elution plate on Temperature Module GEN2 on 3",
"share": false,
"slot": "3",
"type": "tempdeck"
}
]
}
2 changes: 1 addition & 1 deletion protoBuilds/00f7b1_part2/00f7b1_part2.ot2.apiv2.py.json
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15 changes: 14 additions & 1 deletion protoBuilds/010526/010526.ot2.apiv2.py.json
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Expand Up @@ -859,5 +859,18 @@
"description": "Custom Protocol Request",
"protocolName": "Restriction Digests"
},
"modules": []
"modules": [
{
"name": "ThermocyclerContext at Thermocycler Module on 7 lw NEST 96 Well Plate 100 \u00b5L PCR Full Skirt on Thermocycler Module on 7",
"share": false,
"slot": "7",
"type": "thermocycler"
},
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Opentrons 24 Well Aluminum Block with Variant Tubes on Temperature Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "tempdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/04eeb1-part-2/04eeb1-part-2.ot2.apiv2.py.json
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Expand Up @@ -105,5 +105,12 @@
"description": "Custom Protocol Request",
"protocolName": "Illumina COVIDSeq Test: Synthesize First Strand cDNA"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "tempdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/04eeb1-part-3/04eeb1-part-3.ot2.apiv2.py.json
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Expand Up @@ -190,5 +190,12 @@
"description": "Custom Protocol Request",
"protocolName": "Illumina COVIDSeq Test: Amplify cDNA"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "tempdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/04eeb1-part-4/04eeb1-part-4.ot2.apiv2.py.json
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Expand Up @@ -135,5 +135,12 @@
"description": "Custom Protocol Request",
"protocolName": "Illumina COVIDSeq Test: Tagment PCR Amplicons"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "tempdeck"
}
]
}
15 changes: 14 additions & 1 deletion protoBuilds/04eeb1-part-5/04eeb1-part-5.ot2.apiv2.py.json
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Expand Up @@ -123,5 +123,18 @@
"description": "Custom Protocol Request",
"protocolName": "Illumina COVIDSeq Test: Post Tagmentation Clean Up"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "tempdeck"
},
{
"name": "MagneticModuleContext at Magnetic Module GEN2 on 3 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 3",
"share": false,
"slot": "3",
"type": "magdeck"
}
]
}
15 changes: 14 additions & 1 deletion protoBuilds/04eeb1-part-6/04eeb1-part-6.ot2.apiv2.py.json
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Expand Up @@ -123,5 +123,18 @@
"description": "Custom Protocol Request",
"protocolName": "Illumina COVIDSeq Test: Amplify Tagmented Amplicons"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "tempdeck"
},
{
"name": "MagneticModuleContext at Magnetic Module GEN2 on 3 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 3",
"share": false,
"slot": "3",
"type": "magdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/04eeb1-part-7/04eeb1-part-7.ot2.apiv2.py.json
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Expand Up @@ -87,5 +87,12 @@
"description": "Custom Protocol Request",
"protocolName": "Illumina COVIDSeq Test: Pool and Clean Up Libraries"
},
"modules": []
"modules": [
{
"name": "MagneticModuleContext at Magnetic Module GEN2 on 3 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 3",
"share": false,
"slot": "3",
"type": "magdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/04eeb1/04eeb1.ot2.apiv2.py.json
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Expand Up @@ -99,5 +99,12 @@
"description": "Custom Protocol Request",
"protocolName": "Illumina COVIDSeq Test: Anneal RNA"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 1 lw Master Mix Reservoir on Temperature Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "tempdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/0556be-covid-mm-qc-v3/0556be-covid-mm-qc-v3.ot2.apiv2.py.json
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Expand Up @@ -74,5 +74,12 @@
"description": "Custom Protocol Request",
"protocolName": "COVID MM-QC-v3 Protocol"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 10 lw Opentrons 24 Well Aluminum Block with Generic 2 mL Screwcap on Temperature Module GEN2 on 10",
"share": false,
"slot": "10",
"type": "tempdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/0556be-covid-mm-qc/0556be-covid-mm-qc.ot2.apiv2.py.json
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Expand Up @@ -147,5 +147,12 @@
"description": "Custom Protocol Request",
"protocolName": "COVID MM-QC Protocol"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 10 lw Opentrons 24 Well Aluminum Block with Generic 2 mL Screwcap on Temperature Module GEN2 on 10",
"share": false,
"slot": "10",
"type": "tempdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/060c4f/060c4f.ot2.apiv2.py.json
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Expand Up @@ -4773,5 +4773,12 @@
"protocolName": "96-well to 384-well transfer",
"source": "Custom Protocol Request"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN1 on 4 lw Opentrons 96 Well Aluminum Block with NEST Well Plate 100 \u00b5L on Temperature Module GEN1 on 4",
"share": false,
"slot": "4",
"type": "tempdeck"
}
]
}
11 changes: 9 additions & 2 deletions protoBuilds/08878b/08878b.ot2.apiv2.py.json
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Expand Up @@ -51,7 +51,7 @@
],
"labware": [
{
"name": "Bio-Rad 96 Well Plate 200 \u00b5L PCR on Temperature Module GEN1 on 4",
"name": "Bio-Rad 96 Well Plate 200 \u00b5L PCR on Temperature Module on 4",
"share": false,
"slot": "4",
"type": "biorad_96_wellplate_200ul_pcr"
Expand Down Expand Up @@ -99,5 +99,12 @@
"protocolName": "Transfer with Temperature Module",
"source": "Custom Protocol Request"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module on 4 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Temperature Module on 4",
"share": false,
"slot": "4",
"type": "tempdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/0944e4/ngs_cleanup.ot2.apiv2.py.json
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Expand Up @@ -1297,5 +1297,12 @@
"protocolName": "NGS Library Cleanup with Ampure XP Beads",
"source": "Custom Protocol Request"
},
"modules": []
"modules": [
{
"name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw magnetic plate on Magnetic Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "magdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/0a23c6/0a23c6.ot2.apiv2.py.json
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Expand Up @@ -81,5 +81,12 @@
"protocolName": "",
"source": "Custom Protocol Request"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 9 lw Opentrons 96 Well Aluminum Block with NEST Well Plate 100 \u00b5L on Temperature Module GEN2 on 9",
"share": false,
"slot": "9",
"type": "tempdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/0bf4f4-pt2/0bf4f4-pt2.ot2.apiv2.py.json
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Expand Up @@ -1328,5 +1328,12 @@
"protocolName": "Ilumina DNA Prep Part 2 - Post Tagmentation Cleanup",
"source": "Custom Protocol Request"
},
"modules": []
"modules": [
{
"name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "magdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/0bf4f4-pt3/0bf4f4-pt3.ot2.apiv2.py.json
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Expand Up @@ -214,5 +214,12 @@
"protocolName": "Ilumina DNA Prep Part 3 - Clean up Libraries",
"source": "Custom Protocol Request"
},
"modules": []
"modules": [
{
"name": "MagneticModuleContext at Magnetic Module GEN2 on 1 lw Bio-Rad 96 Well Plate 200 \u00b5L PCR on Magnetic Module GEN2 on 1",
"share": false,
"slot": "1",
"type": "magdeck"
}
]
}
9 changes: 8 additions & 1 deletion protoBuilds/0e8e3/0e8e3.ot2.apiv2.py.json
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Expand Up @@ -2457,5 +2457,12 @@
"protocolName": "PCR Prep",
"source": "Custom Protocol Request"
},
"modules": []
"modules": [
{
"name": "TemperatureModuleContext at Temperature Module GEN2 on 10 lw Plate B (DNAse Dilution Plate) on Temperature Module GEN2 on 10",
"share": false,
"slot": "10",
"type": "tempdeck"
}
]
}
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