feat: add GitHub CI

- CI tests
- CodeCov for coverage
- README badges

.github/workflows/test.yml

@@ -0,0 +1,32 @@
+on: push
+jobs:
+    test:
+        runs-on: ubuntu-latest
+        strategy:
+          matrix:
+            python-version: [ "3.11", "3.12", "3.13" ]
+        steps:
+          - uses: actions/checkout@v4
+          - name: Set up Python ${{ matrix.python-version }}
+            uses: actions/setup-python@v5
+            with:
+              python-version: ${{ matrix.python-version }}
+              cache: 'pip'
+          - uses: actions/checkout@v4
+          - name: Install dependencies
+            run: pip install -r requirements.txt
+          - name: Install CodeCov dependencies
+            run: pip install pytest pytest-cov
+          - name: Install self
+            run: pip install -e .
+          - name: Run tests
+            run: |
+              cd tests
+              pytest --cov --cov-report=xml
+          - name: Upload coverage to Codecov
+            uses: codecov/codecov-action@v4
+            with:
+              token: ${{ secrets.CODECOV_TOKEN }}
+              file: ./tests/coverage.xml
+              flags: unittests
+              fail_ci_if_error: false

README.md

@@ -1,5 +1,8 @@
 # Treatment Resistant Depression Database Command Line Interface
 
+[![.github/workflows/test.yml](https://github.com/OxfordRSE/trd-cli/actions/workflows/test.yml/badge.svg)](https://github.com/OxfordRSE/trd-cli/actions/workflows/test.yml)
+[![codecov](https://codecov.io/github/OxfordRSE/trd-cli/graph/badge.svg?token=myj04HCbDQ)](https://codecov.io/github/OxfordRSE/trd-cli)
+
 This CLI performs automated data collection and curation for the TRD Database project.
 
 ## Deployment

requirements.txt

@@ -2,3 +2,4 @@
 click==8.1.7
 pycap==2.6.0
 requests==2.32.3
+typing_extensions==4.12.2