GitHub - PGB-LIV/mzidlib: MzidLib - A library of routines for manipulating data in the PSI's mzIdentML standard.

PGB-LIV / mzidlib Public

Notifications You must be signed in to change notification settings
Fork 12
Star 8

MzidLib - A library of routines for manipulating data in the PSI's mzIdentML standard.

www.proteoannotator.org/

View license

8 stars 12 forks Branches Tags Activity

Star

Notifications

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 104 Commits
.settings		.settings
documentation		documentation
percolator		percolator
src		src
.classpath		.classpath
.project		.project
IPeak v1.0.1.zip		IPeak v1.0.1.zip
LICENSE.txt		LICENSE.txt
ProteoAnnotator_Readme.txt		ProteoAnnotator_Readme.txt
README.txt		README.txt
nbactions.xml		nbactions.xml
pom.xml		pom.xml
pom.xml.next		pom.xml.next
pom.xml.releaseBackup		pom.xml.releaseBackup
release.properties		release.properties
run_examples.bat		run_examples.bat
run_examples.sh		run_examples.sh

Repository files navigation



MzidLib - A library of routines for manipulating data in the PSI's mzIdentML standard. 
ProteoAnnotator is a completely automated software pipeline for integration of mass spectrometry (MS) based proteomic evidence into genome databases. 


ProteoAnnotator is now deprecated and no longer supported. If anyone would like to update or maintain the code base, please do!

  
Citation:

If you use any of these resources in your work, please cite:

MzidLib:

Ghali, F., Krishna, R., Lukasse, P., Martinez-Bartolome, S. et al., A toolkit for the mzIdentML standard: the ProteoIDViewer, the mzidLibrary and the mzidValidator. Mol. Cell Proteomics 2013, 12, 3026–3035.

ProteoAnnotator:
Ghali, F., Krishna, R., Perkins, S., Collins, A. et al., ProteoAnnotator—open source proteogenomics annotation software supporting PSI standards. Proteomics 2014, 14, 2731–2741.