While pulling image from oci registry: failed to get checksum for //ghcr.io/pgscatalog/plink2:2.00a5.10-singularity: no layer found corresponding to SIF image

[gurpreet-bioinfo]

Description of the bug

Hi, I am trying to download the pipeline and test it on a minimal dataset on HPC but keeps on getting the following error:

ERROR ~ Error executing process > 'PGSCATALOG_PGSCCALC:PGSCCALC:MAKE_COMPATIBLE:PLINK2_RELABELPVAR (1)'
Caused by:
  Failed to pull singularity image
    command: singularity pull  --name ghcr.io-pgscatalog-plink2-2.00a5.10-singularity.img.pulling.1719585852061 oras://ghcr.io/pgscatalog/plink2:2.00a5.10-singularity > /dev/null
    status : 255
    hint   : Try and increase singularity.pullTimeout in the config (current is "20m")
    message:
      [31mFATAL:   While pulling image from oci registry: failed to get checksum for //ghcr.io/pgscatalog/plink2:2.00a5.10-singularity: no layer found corresponding to SIF image

Thanks.

Command used and terminal output

$ nextflow run pgscatalog/pgsc_calc -profile test,singularity

Relevant files

No response

System information

• Nextflow version 23.10.1
• Hardware: HPC
• Executor: Slurm
• Container engine: Singularity
• OS: Linux
• https://github.com/pgscatalog/pgsc_calc [compassionate_kalam] DSL2 - revision: ccfd636 [main]

[nebfield]

This is probably a temporary network problem. Are you able to run:

$ singularity pull  --name ghcr.io-pgscatalog-plink2-2.00a5.10-singularity.img.pulling.1719585852061 oras://ghcr.io/pgscatalog/plink2:2.00a5.10-singularity

In an interactive session on your HPC? (it works OK for me)

If it works fine, just try rerunning the workflow 😄