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Error - "Duplicated chromosome entries detected in samplesheet. Check your samplesheet."
bug
Something isn't working
#338
opened Jul 12, 2024 by
gurpreet-bioinfo
COMBINE_SCOREFILE erroring out on custom scorefiles that do not provide other_allele
bug
Something isn't working
#337
opened Jul 11, 2024 by
ashenfernando1
ERROR ~ Error executing process > 'PGSCATALOG_PGSCCALC:PGSCCALC:MAKE_COMPATIBLE:PLINK2_VCF when using --run_ancestry
bug
Something isn't working
#332
opened Jul 4, 2024 by
Carldeboer
Test run fails out of the box with docker (touch: cannot touch '.command.trace': Permission denied)
user-query
User queries & requests
#331
opened Jul 4, 2024 by
GDelevoye
Process exceeded running time limit (4h)
user-query
User queries & requests
#328
opened Jul 1, 2024 by
zl2860
While pulling image from oci registry: failed to get checksum for //ghcr.io/pgscatalog/plink2:2.00a5.10-singularity: no layer found corresponding to SIF image
user-query
User queries & requests
#327
opened Jun 28, 2024 by
gurpreet-bioinfo
Problem when running on hpc computing cluster.
user-query
User queries & requests
#326
opened Jun 27, 2024 by
samreenzafer
ValueError: could not broadcast input array from shape (3065,) into shape (2777,)
bug
Something isn't working
Scoring for non-additive models that aren't dominant/recessive
enhancement
New feature or request
#314
opened Jun 14, 2024 by
smlmbrt
ToDo: test case with single sample
enhancement
New feature or request
#287
opened Apr 25, 2024 by
smlmbrt
Ensure pgsc_calc works with FID & IID columns
bug
Something isn't working
enhancement
New feature or request
Improve gnomAD reference panel (HGDP+1kG)
documentation
Improvements or additions to documentation
enhancement
New feature or request
#183
opened Sep 28, 2023 by
smlmbrt
2 of 4 tasks
Reference creation: current docs/code doesn't support other data
bug
Something isn't working
documentation
Improvements or additions to documentation
#164
opened Sep 7, 2023 by
smlmbrt
Improvements to PCA steps & default reference panel
enhancement
New feature or request
#133
opened Jul 31, 2023 by
smlmbrt
1 of 3 tasks
Allow combined scorefiles as input
documentation
Improvements or additions to documentation
enhancement
New feature or request
#64
opened Nov 15, 2022 by
smlmbrt
Enhance Sample and Variant-level QC
enhancement
New feature or request
#21
opened Mar 21, 2022 by
smlmbrt
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