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Calibration Option for Burden Scores#111

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meyerkm wants to merge 39 commits intomainPMBio/deeprvat:mainfrom score-calibrationPMBio/deeprvat:score-calibrationCopy head branch name to clipboard

+112-146

Commits

Commits on Jul 15, 2024

• add center & scaling feature for burden scores

  meyerkm

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  653cff2

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Commits on Jul 17, 2024

• fixup snakemake rule spacing

  meyerkm

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• Add in center_scale_burden option to config generation

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• fixup! Format Python code with psf/black pull_request

  

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Commits on Jul 18, 2024

• remove unneeded function argument

  meyerkm

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  542e190

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• Merge branch 'score-calibration' of https://github.com/PMBio/deeprvat into score-calibration

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• fixup! Format Python code with psf/black pull_request

  

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Commits on Jul 22, 2024

• reduce max computation and set to 1.0

  meyerkm

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  583f54b

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• Merge branch 'score-calibration' of https://github.com/PMBio/deeprvat into score-calibration

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  5baa52e

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• fixup! Format Python code with psf/black pull_request

  

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Commits on Aug 20, 2024

• move max computation to compute_burdens

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• fixup! Format Python code with psf/black pull_request

  

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Commits on Aug 21, 2024

• update default to perform score calibration of burdens

  meyerkm

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  4ddbb5a

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• Merge remote-tracking branch 'origin/main' into score-calibration

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Commits on Oct 7, 2024

• Merge remote-tracking branch 'origin/main' into score-calibration

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  036a0de

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• remove lsf dir

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  9c8901f

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• fixup! Format Python code with psf/black pull_request

  

  PMBio

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  4879d9b

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• bugfix compute_burdens rule

  meyerkm

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  c39cf8d

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• bugfix

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  49e06f6

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• remove skip_burdens from get_burden

  meyerkm

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  ee88758

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• bugfix max computation from main branch merge

  meyerkm

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  9a112dd

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• fixup! Format Python code with psf/black pull_request

  

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• Merge remote-tracking branch 'origin/main' into score-calibration

  meyerkm

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Commits on Oct 8, 2024

• github action test

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  ae8450a

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• specify upload-artifact version

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Commits on Oct 9, 2024

• Reset default of center_scale_burdens to True

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  e28f873

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Commits on Oct 14, 2024

• remove unused module

  meyerkm

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  042aa42

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• remove extra space

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• remove extra space

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  68aabb3

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• add release notes

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  08e01dd

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• Merge branch 'score-calibration' of github.com:PMBio/deeprvat into score-calibration

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  97bd07c

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Commits on Oct 17, 2024

• update scaling function

  meyerkm

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• fixup! Format Python code with psf/black pull_request

  

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  a260b8b

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• specify center_scale_burdens option in example configs

  meyerkm

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Commits on Oct 22, 2024

• remove hard-coded annotation length

  meyerkm

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  e4d31d6

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• fixup! Format Python code with psf/black pull_request

  

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  c86757b

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• Merge remote-tracking branch 'origin/main' into score-calibration

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  d69451f

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Commits on Nov 4, 2024

• add in center_scale_burdens option from config

  meyerkm

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  b77a98a

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• Merge remote-tracking branch 'origin/main' into score-calibration

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