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Adjust formatting in the Readme
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alchemistmatt committed Mar 2, 2021
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4 changes: 2 additions & 2 deletions Readme.md
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Converts a [mzIdentML](http://www.psidev.info/mzidentml) file (.mzid) created by MS-GF+ to a tab-delimited text file.

Although MS-GF+ has this option (see [MzidToTsv.html](https://msgfplus.github.io/msgfplus/MzidToTsv.html) ),
Although MS-GF+ has this option (see [MzidToTsv.html](https://msgfplus.github.io/msgfplus/MzidToTsv.html)),
MzidToTsvConverter.exe can convert the .mzid file faster, using less memory.

## Details
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`-maxQValue` or `-MaxQ` or `-QValue`
* Filter the results, excluding those with a QValue greater than this threshold
* For example, -qvalue:0.001
* For example, `-qvalue:0.001`

`-recurse` or `-r`
* If mzid path is a directory, specifying this will cause .mzid files in subdirectories to also be converted
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