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Parcels-code / virtualship Public

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Refactor instruments#216

Closed

j-atkins wants to merge 61 commits intov1-devParcels-code/virtualship:v1-devfrom

instrument-refactorParcels-code/virtualship:instrument-refactorCopy head branch name to clipboard

Conversation Commits61 (61)Checks Files changed

Closed

Refactor instruments#216
j-atkins wants to merge 61 commits intov1-devfrom
instrument-refactor

Commits

Commits on Oct 21, 2025

first refactoring step, parent instrument classes
j-atkins
committed
ignore refactoring notes in gitignore
j-atkins
committed
add note to remove upon completing v1 dev
j-atkins
committed
scratch inputdataset objects integration to _fetch
j-atkins
committed
add call to download_data()
j-atkins
committed
Add new instrument classes and update InputDataset to include depth parameters
j-atkins
committed
Refactor instrument handling in _fetch and update imports for consistency
j-atkins
committed
Refactor instrument classes and re-add (temporary) simulation functions across multiple files
j-atkins
committed
improve/clarify comments and notes
j-atkins
committed
Refactor ArgoFloat and XBT classes to include depth parameters and remove outdated comments
j-atkins
committed
avoid circular import issues
j-atkins
committed
make tests for InputDataset base class
j-atkins
committed

Commits on Oct 22, 2025

refactor instrument handling in _fetch.py and update expedition model to include get_instruments method
j-atkins
committed
refactor instrument error handling in Expedition model and remove Schedule and ShipConfig classes
j-atkins
committed
add is_underway property to InstrumentType and filter instruments in plan UI
j-atkins
committed
enhance CLI output for fetching
j-atkins
committed
general fixes and new error class
j-atkins
committed
refactor test cases to use Expedition object
j-atkins
committed

Commits on Oct 27, 2025

Merge branch v1-dev into instrument-refactor
j-atkins
committed
move instruments base classes out of models/ dir
j-atkins
committed
update base class imports
j-atkins
committed
make get_instruments_registry more robust with testing
j-atkins
committed
Merge branch 'v1-dev' into instrument-refactor
j-atkins
committed
refactor: reorganize instrument classes and update imports for clarity
j-atkins
committed
implement instrument registration and input dataset retrieval
j-atkins
committed
refactor: reorganize imports in instrument test files for consistency
j-atkins
committed

Commits on Oct 28, 2025

further refactoring: instrument classes to use a unified InputDataset and Instrument structure
j-atkins
committed
evaporate simulate_measurements.py; centralise run logic
j-atkins
committed
draft up check land using bathymetry
j-atkins
committed
small bug fixes
j-atkins
committed

Commits on Oct 29, 2025

patch copernicus product id search logic to new instrument classes, plus more debugging; verbose INFO is outstanding
j-atkins
committed
adding U and V to instruments where missing
j-atkins
committed
enhanced error messaging for XBT in too shallow regions
j-atkins
committed
bug fixes
j-atkins
committed

Commits on Nov 3, 2025

version U and V downloaded
j-atkins
committed
dummy U and V
j-atkins
committed
Neaten up logging output
j-atkins
committed
small bug fixes
j-atkins
committed
tidy up
j-atkins
committed
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot]
committed
Refactor type hints and improve test coverage for instruments and utils
j-atkins
committed
Remove TODO comments and tidy up imports in test files
j-atkins
committed
Merge branch 'instrument-refactor' of github.com:OceanParcels/virtualship into instrument-refactor
j-atkins
committed
Refactor bathymetry error handling, update verification methods and remove unused function
j-atkins
committed

Commits on Nov 5, 2025

add code of conduct to assignments (#182)
ammedd
authored
add teacher info to documentation (#213)

ammedd
and
pre-commit-ci[bot]
authored
move product id selection logic to utils
j-atkins
committed
Merge branch 'main' into instrument-refactor
j-atkins
committed
update
j-atkins
committed
first draft direct ingestion via copernicusmarine (CTD only)
j-atkins
committed
refactor bathymetry data handling and add (temporary) timing for performance evaluation
j-atkins
committed

Commits on Nov 6, 2025

update instrument constructors for Copernicus Marine ingestion
j-atkins
committed
move expedition/do_expedition.py to cli/_run.py, rename Instrument.run() to Instrument.execute()
j-atkins
committed
move checkpoint class to models, move expedition_cost() to utils.py
j-atkins
committed
update imports for expedition_cost
j-atkins
committed
working with drifters (bodge), CTD_BGC not yet working
j-atkins
committed

Commits on Nov 7, 2025

Merge branch 'instrument-refactor' into ingest
j-atkins
committed
remove fetch and all associated logic
j-atkins
committed
update docstrings/--help info
j-atkins
committed
add buffers to drifters and argos, plus depth limits for drifters
j-atkins
committed
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot]
committed

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